Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   Q7260_RS07770 Genome accession   NZ_CP131440
Coordinates   1479139..1480320 (-) Length   393 a.a.
NCBI ID   WP_057033637.1    Uniprot ID   A0A5T2BQ87
Organism   Campylobacter jejuni strain S36     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1474139..1485320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS07740 (Q7260_07740) - 1474683..1475024 (+) 342 WP_002867250.1 hypothetical protein -
  Q7260_RS07745 (Q7260_07745) flgM 1475087..1475284 (+) 198 WP_002867249.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q7260_RS07750 (Q7260_07750) - 1475327..1475761 (+) 435 WP_057033639.1 flagellar protein FlgN -
  Q7260_RS07755 (Q7260_07755) flgK 1475771..1477597 (+) 1827 WP_057033638.1 flagellar hook-associated protein FlgK -
  Q7260_RS07760 (Q7260_07760) - 1477614..1478378 (+) 765 WP_002851318.1 TIGR02757 family protein -
  Q7260_RS07765 (Q7260_07765) - 1478382..1479146 (+) 765 WP_002855821.1 TSUP family transporter -
  Q7260_RS07770 (Q7260_07770) ctsF 1479139..1480320 (-) 1182 WP_057033637.1 type II secretion system F family protein Machinery gene
  Q7260_RS07775 (Q7260_07775) ctsE 1480317..1481876 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  Q7260_RS07780 (Q7260_07780) ctsX 1481866..1482453 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  Q7260_RS07785 (Q7260_07785) ctsP 1482457..1483065 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  Q7260_RS07790 (Q7260_07790) ctsD 1483058..1484470 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  Q7260_RS07795 (Q7260_07795) ctsR 1484448..1484759 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45758.39 Da        Isoelectric Point: 9.0938

>NTDB_id=862408 Q7260_RS07770 WP_057033637.1 1479139..1480320(-) (ctsF) [Campylobacter jejuni strain S36]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSIAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=862408 Q7260_RS07770 WP_057033637.1 1479139..1480320(-) (ctsF) [Campylobacter jejuni strain S36]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTGTCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGATTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCCAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCATTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAACTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T2BQ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982