Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   Q7260_RS07780 Genome accession   NZ_CP131440
Coordinates   1481866..1482453 (-) Length   195 a.a.
NCBI ID   WP_032584555.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S36     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476866..1487453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS07760 (Q7260_07760) - 1477614..1478378 (+) 765 WP_002851318.1 TIGR02757 family protein -
  Q7260_RS07765 (Q7260_07765) - 1478382..1479146 (+) 765 WP_002855821.1 TSUP family transporter -
  Q7260_RS07770 (Q7260_07770) ctsF 1479139..1480320 (-) 1182 WP_057033637.1 type II secretion system F family protein Machinery gene
  Q7260_RS07775 (Q7260_07775) ctsE 1480317..1481876 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  Q7260_RS07780 (Q7260_07780) ctsX 1481866..1482453 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  Q7260_RS07785 (Q7260_07785) ctsP 1482457..1483065 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  Q7260_RS07790 (Q7260_07790) ctsD 1483058..1484470 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  Q7260_RS07795 (Q7260_07795) ctsR 1484448..1484759 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23433.52 Da        Isoelectric Point: 9.8479

>NTDB_id=862410 Q7260_RS07780 WP_032584555.1 1481866..1482453(-) (ctsX) [Campylobacter jejuni strain S36]
MQERIKELELRYKYFLLKRYLKYLFLIVLILVIAFCFFVIMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=862410 Q7260_RS07780 WP_032584555.1 1481866..1482453(-) (ctsX) [Campylobacter jejuni strain S36]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATATTTTTTACTTAAAAGATATTTAAAATATTTATTTTTAAT
TGTTTTAATCTTAGTAATAGCATTTTGTTTTTTTGTGATAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAGCATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

97.436

100

0.974