Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   Q7260_RS07795 Genome accession   NZ_CP131440
Coordinates   1484448..1484759 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain S36     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1479448..1489759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS07775 (Q7260_07775) ctsE 1480317..1481876 (-) 1560 WP_032586875.1 GspE/PulE family protein Machinery gene
  Q7260_RS07780 (Q7260_07780) ctsX 1481866..1482453 (-) 588 WP_032584555.1 transformation system protein Machinery gene
  Q7260_RS07785 (Q7260_07785) ctsP 1482457..1483065 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  Q7260_RS07790 (Q7260_07790) ctsD 1483058..1484470 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  Q7260_RS07795 (Q7260_07795) ctsR 1484448..1484759 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  Q7260_RS07800 (Q7260_07800) nifJ 1484783..1488343 (-) 3561 WP_057033678.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  Q7260_RS07805 (Q7260_07805) - 1488436..1489078 (-) 643 Protein_1518 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=862413 Q7260_RS07795 WP_002855438.1 1484448..1484759(-) (ctsR) [Campylobacter jejuni strain S36]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=862413 Q7260_RS07795 WP_002855438.1 1484448..1484759(-) (ctsR) [Campylobacter jejuni strain S36]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1