Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KI212_RS10820 Genome accession   NZ_AP024589
Coordinates   2225176..2225691 (-) Length   171 a.a.
NCBI ID   WP_059107073.1    Uniprot ID   A0AAP8PNG1
Organism   Staphylococcus auricularis strain JCM 2421     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2220176..2230691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI212_RS10780 hchA 2220419..2221294 (-) 876 Protein_2085 glyoxalase III HchA -
  KI212_RS10785 (JCM2421_21370) - 2221574..2221741 (+) 168 WP_169791247.1 hypothetical protein -
  KI212_RS10790 (JCM2421_21380) - 2221810..2221950 (+) 141 WP_169791246.1 hypothetical protein -
  KI212_RS11270 (JCM2421_21410) - 2222736..2222885 (+) 150 WP_083498162.1 helix-turn-helix transcriptional regulator -
  KI212_RS10800 (JCM2421_21420) - 2222941..2223270 (+) 330 WP_059107076.1 hypothetical protein -
  KI212_RS10805 - 2223428..2223678 (+) 251 Protein_2090 SAR2788 family putative toxin -
  KI212_RS10810 (JCM2421_21430) - 2223692..2224300 (+) 609 WP_059107075.1 DUF3885 domain-containing protein -
  KI212_RS10815 (JCM2421_21450) rpsR 2224890..2225132 (-) 243 WP_059107074.1 30S ribosomal protein S18 -
  KI212_RS10820 (JCM2421_21460) ssbA 2225176..2225691 (-) 516 WP_059107073.1 single-stranded DNA-binding protein Machinery gene
  KI212_RS10825 (JCM2421_21470) rpsF 2225711..2226016 (-) 306 WP_059107072.1 30S ribosomal protein S6 -
  KI212_RS10830 (JCM2421_21480) - 2226288..2227097 (+) 810 WP_059107071.1 GH25 family lysozyme -
  KI212_RS10835 (JCM2421_21490) ychF 2227185..2228282 (-) 1098 WP_059107070.1 redox-regulated ATPase YchF -
  KI212_RS10840 (JCM2421_21500) - 2228282..2228497 (-) 216 WP_059107069.1 DUF951 domain-containing protein -
  KI212_RS10845 (JCM2421_21510) - 2228519..2229403 (-) 885 WP_059107068.1 mechanosensitive ion channel family protein -
  KI212_RS10850 (JCM2421_21520) - 2229674..2230516 (-) 843 WP_059107105.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18870.40 Da        Isoelectric Point: 4.7172

>NTDB_id=86237 KI212_RS10820 WP_059107073.1 2225176..2225691(-) (ssbA) [Staphylococcus auricularis strain JCM 2421]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVSNYLFKGSLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKGQNQRHSQDGNNNFQNFGQNNFGGQQSGQNTSSYSNNNDNGGSQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86237 KI212_RS10820 WP_059107073.1 2225176..2225691(-) (ssbA) [Staphylococcus auricularis strain JCM 2421]
ATGATAAATAGAGTTGTATTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGCGTTGC
GACATTTACGCTTGCTGTAAACCGTACGTTTACGAACGCACAAGGTGAACGTGAAGCAGATTTCATTAACTGTGTGGTAT
TTAGAAAACAAGCAGATAATGTAAGCAACTACTTATTTAAAGGTAGTTTAGCTGGCGTAGATGGACGTTTACAATCACGT
AGTTATGAAAACCAAGAAGGTCGACGTATCTTTGTGACAGAAGTTGTATGCGACAGTGTTCAATTCCTTGAACCTAAAGG
TCAAAACCAAAGACATTCACAAGATGGAAACAACAATTTCCAAAACTTTGGTCAAAACAACTTTGGCGGACAACAATCCG
GTCAAAATACGTCATCTTACTCAAACAATAACGATAATGGTGGATCACAATCTGATAACCCATTCGCAAATGCTAATGGA
CCTATCGATATCAGTGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

55.233

100

0.556
  ssb Glaesserella parasuis strain SC1401

34.783

100

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

64.327

0.368

Multiple sequence alignment