Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q6388_RS02340 Genome accession   NZ_CP130895
Coordinates   446614..447225 (+) Length   203 a.a.
NCBI ID   WP_050169631.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 441614..452225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS02315 (Q6388_02315) - 442207..442539 (+) 333 WP_003687908.1 hypothetical protein -
  Q6388_RS02320 (Q6388_02320) - 442870..443379 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6388_RS02325 (Q6388_02325) - 443611..444192 (-) 582 WP_047923823.1 superoxide dismutase -
  Q6388_RS02330 (Q6388_02330) dnaB 444356..445762 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6388_RS02335 (Q6388_02335) pilH 445917..446582 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6388_RS02340 (Q6388_02340) pilV 446614..447225 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6388_RS02345 (Q6388_02345) pilJ 447222..448202 (+) 981 WP_304672993.1 PilW family protein Machinery gene
  Q6388_RS02350 (Q6388_02350) pilK 448181..448780 (+) 600 WP_304672994.1 pilus assembly protein Machinery gene
  Q6388_RS02355 (Q6388_02355) pilL 448782..449255 (+) 474 WP_304673005.1 PilX family type IV pilin Machinery gene
  Q6388_RS02360 (Q6388_02360) - 449325..449633 (-) 309 WP_304672995.1 AzlD family protein -
  Q6388_RS02365 (Q6388_02365) - 449630..450338 (-) 709 Protein_462 AzlC family ABC transporter permease -
  Q6388_RS02370 (Q6388_02370) dut 450504..450956 (+) 453 WP_003702446.1 dUTP diphosphatase -
  Q6388_RS02375 (Q6388_02375) dapC 451034..452221 (+) 1188 WP_304672996.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22076.13 Da        Isoelectric Point: 4.8546

>NTDB_id=861872 Q6388_RS02340 WP_050169631.1 446614..447225(+) (pilV) [Neisseria gonorrhoeae strain NJ1913940]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYMGKQTLSAVDGKFMLDAEKSKAQLAEEQLKRFSHELKNALPDAVAIHYAVCKDSSGDAPTLSDSGAFSSNCDNKAN
GDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=861872 Q6388_RS02340 WP_050169631.1 446614..447225(+) (pilV) [Neisseria gonorrhoeae strain NJ1913940]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGACAGCAACAAGAAAAAC
TATAGTCTTTACATGGGAAAACAGACACTATCAGCTGTGGATGGTAAGTTTATGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTCATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGACGCGCCGACATTGTCCGACAGCGGTGCTTTTTCTTCAAATTGCGACAATAAGGCAAAC
GGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAAGTGAG
CGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.372

100

0.911
  pilI Neisseria gonorrhoeae MS11

83.744

100

0.837
  pilV Neisseria gonorrhoeae MS11

83.744

100

0.837