Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6388_RS02350 Genome accession   NZ_CP130895
Coordinates   448181..448780 (+) Length   199 a.a.
NCBI ID   WP_304672994.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443181..453780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS02325 (Q6388_02325) - 443611..444192 (-) 582 WP_047923823.1 superoxide dismutase -
  Q6388_RS02330 (Q6388_02330) dnaB 444356..445762 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6388_RS02335 (Q6388_02335) pilH 445917..446582 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6388_RS02340 (Q6388_02340) pilV 446614..447225 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6388_RS02345 (Q6388_02345) pilJ 447222..448202 (+) 981 WP_304672993.1 PilW family protein Machinery gene
  Q6388_RS02350 (Q6388_02350) pilK 448181..448780 (+) 600 WP_304672994.1 pilus assembly protein Machinery gene
  Q6388_RS02355 (Q6388_02355) pilL 448782..449255 (+) 474 WP_304673005.1 PilX family type IV pilin Machinery gene
  Q6388_RS02360 (Q6388_02360) - 449325..449633 (-) 309 WP_304672995.1 AzlD family protein -
  Q6388_RS02365 (Q6388_02365) - 449630..450338 (-) 709 Protein_462 AzlC family ABC transporter permease -
  Q6388_RS02370 (Q6388_02370) dut 450504..450956 (+) 453 WP_003702446.1 dUTP diphosphatase -
  Q6388_RS02375 (Q6388_02375) dapC 451034..452221 (+) 1188 WP_304672996.1 succinyldiaminopimelate transaminase -
  Q6388_RS02380 (Q6388_02380) yaaA 452377..453156 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21620.49 Da        Isoelectric Point: 8.0870

>NTDB_id=861874 Q6388_RS02350 WP_304672994.1 448181..448780(+) (pilK) [Neisseria gonorrhoeae strain NJ1913940]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPTVEAVKRSCPANSASLCIDNQGVEYKKGTGNVSKMPRYII
EYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 600 bp        

>NTDB_id=861874 Q6388_RS02350 WP_304672994.1 448181..448780(+) (pilK) [Neisseria gonorrhoeae strain NJ1913940]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCCGTGAAGCGTTCTTGCCCTGCAAATTCTG
CCAGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCGCGCTATATTATC
GAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.103

100

0.95