Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q6388_RS02335 Genome accession   NZ_CP130895
Coordinates   445917..446582 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1913940     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440917..451582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6388_RS02310 (Q6388_02310) cysT 441192..442021 (-) 830 Protein_451 sulfate ABC transporter permease subunit CysT -
  Q6388_RS02315 (Q6388_02315) - 442207..442539 (+) 333 WP_003687908.1 hypothetical protein -
  Q6388_RS02320 (Q6388_02320) - 442870..443379 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6388_RS02325 (Q6388_02325) - 443611..444192 (-) 582 WP_047923823.1 superoxide dismutase -
  Q6388_RS02330 (Q6388_02330) dnaB 444356..445762 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6388_RS02335 (Q6388_02335) pilH 445917..446582 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6388_RS02340 (Q6388_02340) pilV 446614..447225 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6388_RS02345 (Q6388_02345) pilJ 447222..448202 (+) 981 WP_304672993.1 PilW family protein Machinery gene
  Q6388_RS02350 (Q6388_02350) pilK 448181..448780 (+) 600 WP_304672994.1 pilus assembly protein Machinery gene
  Q6388_RS02355 (Q6388_02355) pilL 448782..449255 (+) 474 WP_304673005.1 PilX family type IV pilin Machinery gene
  Q6388_RS02360 (Q6388_02360) - 449325..449633 (-) 309 WP_304672995.1 AzlD family protein -
  Q6388_RS02365 (Q6388_02365) - 449630..450338 (-) 709 Protein_462 AzlC family ABC transporter permease -
  Q6388_RS02370 (Q6388_02370) dut 450504..450956 (+) 453 WP_003702446.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=861871 Q6388_RS02335 WP_047918678.1 445917..446582(+) (pilH) [Neisseria gonorrhoeae strain NJ1913940]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=861871 Q6388_RS02335 WP_047918678.1 445917..446582(+) (pilH) [Neisseria gonorrhoeae strain NJ1913940]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869