Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   Q6357_RS16430 Genome accession   NZ_CP130888
Coordinates   3190800..3191180 (-) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 28M1-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3185800..3196180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6357_RS16395 (Q6357_16395) - 3186399..3186629 (-) 231 WP_061419189.1 DUF896 domain-containing protein -
  Q6357_RS16400 (Q6357_16400) - 3186699..3187346 (-) 648 WP_041507218.1 recombinase family protein -
  Q6357_RS16405 (Q6357_16405) yneA 3187364..3187675 (-) 312 WP_007499348.1 cell division suppressor protein YneA -
  Q6357_RS16410 (Q6357_16410) lexA 3187835..3188455 (+) 621 WP_007499350.1 transcriptional repressor LexA -
  Q6357_RS16415 (Q6357_16415) - 3188503..3188946 (-) 444 WP_041507219.1 hypothetical protein -
  Q6357_RS16420 (Q6357_16420) - 3189233..3189775 (+) 543 WP_041507220.1 IseA DL-endopeptidase inhibitor family protein -
  Q6357_RS16425 (Q6357_16425) - 3189808..3190656 (-) 849 WP_017359585.1 STAS domain-containing protein -
  Q6357_RS16430 (Q6357_16430) nucA/comI 3190800..3191180 (-) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  Q6357_RS16435 (Q6357_16435) - 3191408..3193402 (-) 1995 WP_304717172.1 glycosyltransferase family 39 protein -
  Q6357_RS16440 (Q6357_16440) - 3193549..3194457 (-) 909 WP_008343827.1 serine protease -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=861553 Q6357_RS16430 WP_224559893.1 3190800..3191180(-) (nucA/comI) [Bacillus altitudinis strain 28M1-1]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=861553 Q6357_RS16430 WP_224559893.1 3190800..3191180(-) (nucA/comI) [Bacillus altitudinis strain 28M1-1]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGAGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGGGAAACGAATTTTATTTATTGTTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556