Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q5Z11_RS15805 Genome accession   NZ_CP130832
Coordinates   3541737..3542795 (-) Length   352 a.a.
NCBI ID   WP_345783893.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 610A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3536737..3547795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z11_RS15780 - 3536760..3537779 (-) 1020 WP_303747267.1 MoxR family ATPase -
  Q5Z11_RS15785 - 3537881..3539770 (-) 1890 WP_303747268.1 type IV pilus secretin PilQ -
  Q5Z11_RS15790 - 3539790..3540320 (-) 531 WP_303747269.1 pilus assembly protein PilP -
  Q5Z11_RS15795 - 3540323..3540985 (-) 663 WP_303747270.1 type 4a pilus biogenesis protein PilO -
  Q5Z11_RS15800 - 3540982..3541737 (-) 756 WP_303747271.1 PilN domain-containing protein -
  Q5Z11_RS15805 comM 3541737..3542795 (-) 1059 WP_345783893.1 pilus assembly protein PilM Machinery gene
  Q5Z11_RS15810 - 3543010..3545448 (+) 2439 WP_303747273.1 penicillin-binding protein 1A -
  Q5Z11_RS15815 - 3545524..3546153 (+) 630 WP_303747274.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37481.99 Da        Isoelectric Point: 4.4230

>NTDB_id=861504 Q5Z11_RS15805 WP_345783893.1 3541737..3542795(-) (comM) [Stenotrophomonas sp. 610A2]
MGLIPKSQTPIIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVARSGSKAKGAAAA
VAGSAVITKVIPMPADLDENDMEAQVELEAVNYIPYPIDEVNLDFEVLGPVPNNPEMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAIENAFALVASELAVPSDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYDVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALIGLPTMVEEQLGVATSVANPLA
QMTLGPKVQAHALNQDAPALMIATGLAMRGFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=861504 Q5Z11_RS15805 WP_345783893.1 3541737..3542795(-) (comM) [Stenotrophomonas sp. 610A2]
GTGGGGCTTATCCCAAAGAGTCAGACGCCCATCATTGGCGTCGACATCAGTTCGACTGCGGTGAAGCTATTGCAGCTTTC
CCGCAGCGGTAACCGTTTCCGCGTGGAACACTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAAAACATTG
TCGAAGTCGAAGCAGTCGGCGAAGCGATTCGTCGGGCTGTTGCGCGTTCAGGCAGCAAGGCCAAGGGGGCGGCTGCCGCT
GTTGCAGGCTCTGCGGTGATCACCAAGGTGATTCCGATGCCAGCAGATCTGGACGAGAACGACATGGAGGCCCAGGTCGA
ATTGGAGGCGGTGAACTACATCCCGTACCCAATCGACGAAGTGAACCTCGATTTCGAAGTGCTGGGTCCAGTGCCGAACA
ATCCGGAGATGGTGCAGGTACTGTTGGCCGCATCGCGTTCCGAGAACGTGGAGCTGCGCCAGTCCGCGCTGGAGCTGGGT
GGGCTGACCGCCAAGGTGATGGATGTGGAAGCGTTCGCAATCGAGAACGCCTTTGCATTGGTCGCCAGCGAGCTGGCTGT
ACCCAGTGATGGCGTGGTGGCGCTGGTCGACATCGGCGCAACCATGACCACGCTCAATGTGTTGCGCGGCGGCCGTAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTACGGCCTGAGCTACGAGGAG
GCAGGTCTGGCCAAGCGCCAGGGCGGCTTGCCGGAGAGCTACGACGTCGAAGTGCTGGAACCGTTCAAGGAAGCGACAGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCTGGCAGCGAGTTCAACCGCGTCGACCACATCGTCCTGGCCGGCG
GCTGTGCGGCCCTGATCGGTCTGCCGACCATGGTGGAAGAACAGTTGGGCGTGGCGACATCGGTGGCCAATCCCTTGGCG
CAGATGACGCTGGGGCCGAAAGTCCAGGCTCATGCACTGAACCAGGATGCGCCGGCGCTGATGATCGCGACGGGTCTGGC
CATGAGGGGGTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

49.432

100

0.494
  pilM Acinetobacter baumannii D1279779

49.432

100

0.494
  comM Acinetobacter nosocomialis M2

49.432

100

0.494
  pilM Legionella pneumophila strain ERS1305867

47.989

98.864

0.474