Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WCU38_RS22690 Genome accession   NZ_CP147578
Coordinates   4563695..4564231 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain GN05476     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4558695..4569231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU38_RS22670 (WCU38_22680) soxR 4560424..4560888 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  WCU38_RS22675 (WCU38_22685) soxS 4560974..4561297 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WCU38_RS22680 (WCU38_22690) pdeC 4561333..4562886 (-) 1554 WP_001468319.1 c-di-GMP phosphodiesterase PdeC -
  WCU38_RS22685 (WCU38_22695) yjcB 4563315..4563596 (+) 282 WP_001296643.1 YjcB family protein -
  WCU38_RS22690 (WCU38_22700) ssb 4563695..4564231 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WCU38_RS22695 (WCU38_22705) uvrA 4564486..4567308 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  WCU38_RS22700 (WCU38_22710) yjbR 4567343..4567699 (-) 357 WP_000155672.1 MmcQ/YjbR family DNA-binding protein -
  WCU38_RS22705 (WCU38_22715) yjbQ 4567703..4568119 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WCU38_RS22710 (WCU38_22720) aphA 4568230..4568943 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=861443 WCU38_RS22690 WP_000168305.1 4563695..4564231(-) (ssb) [Escherichia coli strain GN05476]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=861443 WCU38_RS22690 WP_000168305.1 4563695..4564231(-) (ssb) [Escherichia coli strain GN05476]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489