Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   Q5H80_RS08265 Genome accession   NZ_CP130748
Coordinates   1912790..1913371 (-) Length   193 a.a.
NCBI ID   WP_304564312.1    Uniprot ID   -
Organism   Vibrio sp. SNU_ST1     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1907790..1918371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS08245 (Q5H80_08245) - 1907869..1909131 (-) 1263 WP_304564305.1 DUF945 family protein -
  Q5H80_RS08250 (Q5H80_08250) - 1909315..1911258 (+) 1944 WP_304564306.1 ATP-binding protein -
  Q5H80_RS08255 (Q5H80_08255) - 1911251..1911748 (+) 498 WP_304564308.1 response regulator -
  Q5H80_RS08260 (Q5H80_08260) - 1912108..1912662 (+) 555 WP_304564309.1 hypothetical protein -
  Q5H80_RS08265 (Q5H80_08265) tfoX 1912790..1913371 (-) 582 WP_304564312.1 TfoX/Sxy family DNA transformation protein Regulator
  Q5H80_RS08270 (Q5H80_08270) - 1913727..1914647 (+) 921 WP_304564313.1 HDOD domain-containing protein -
  Q5H80_RS08275 (Q5H80_08275) - 1914702..1915607 (+) 906 WP_304564315.1 lysine exporter LysO family protein -
  Q5H80_RS08280 (Q5H80_08280) - 1915782..1916309 (+) 528 WP_017101465.1 hypothetical protein -
  Q5H80_RS08285 (Q5H80_08285) panP 1916428..1918071 (+) 1644 WP_304564320.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22174.55 Da        Isoelectric Point: 9.5897

>NTDB_id=861293 Q5H80_RS08265 WP_304564312.1 1912790..1913371(-) (tfoX) [Vibrio sp. SNU_ST1]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEDCVFIRGGKLLDKKLTGLDCEKYRHVKKQTTATVNYYDITD
LFTSEHPELDSIIRTSIDNSVQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGASEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=861293 Q5H80_RS08265 WP_304564312.1 1912790..1913371(-) (tfoX) [Vibrio sp. SNU_ST1]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAACATCAAAAGCGCTCTATGTTTGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTGTTGAGTGAAGATTGTGTATTCATTCGAGGTGGGAAGTTATTAGATAAAAAGC
TGACGGGACTTGATTGTGAAAAGTATCGTCATGTAAAAAAGCAGACTACAGCAACCGTGAATTACTACGATATCACGGAT
CTGTTTACATCAGAACATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAGTTCAGCAACGTAGCTTCAA
AAAATCATCAGCGAGCCGTAGATTAAGGGATCTGCCTAACATGCAACTTACATTAGAACGCATGGTTAAAAAGGCGGGAG
TGGATGATGTTTCAATGTTTATGCAGTTGGGGGCATCTGAAGTGTTTAATAAGGTTCGTAAAGCGTACGGAAACGACGTT
GATCTGAAGCTACTTTGGAAGTTTGCAGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.611

100

0.746
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.611

100

0.746
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.611

100

0.746
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.611

100

0.746
  tfoX Vibrio cholerae strain A1552

74.611

100

0.746
  tfoX Vibrio campbellii strain DS40M4

70.984

100

0.71
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.984

100

0.71
  tfoX Aliivibrio fischeri ES114

56.842

98.446

0.56