Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WCU23_RS23070 Genome accession   NZ_CP147571
Coordinates   4653762..4654298 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain GN04275     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4648762..4659298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU23_RS23050 (WCU23_23050) soxR 4650491..4650955 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  WCU23_RS23055 (WCU23_23055) soxS 4651041..4651364 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WCU23_RS23060 (WCU23_23060) pdeC 4651367..4652953 (-) 1587 WP_001314348.1 c-di-GMP phosphodiesterase PdeC -
  WCU23_RS23065 (WCU23_23065) yjcB 4653382..4653663 (+) 282 WP_001296643.1 YjcB family protein -
  WCU23_RS23070 (WCU23_23070) ssb 4653762..4654298 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WCU23_RS23075 (WCU23_23075) uvrA 4654552..4657374 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  WCU23_RS23080 (WCU23_23080) yjbR 4657409..4657765 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WCU23_RS23085 (WCU23_23085) yjbQ 4657769..4658185 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WCU23_RS23090 (WCU23_23090) aphA 4658296..4659009 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=861184 WCU23_RS23070 WP_000168305.1 4653762..4654298(-) (ssb) [Escherichia coli strain GN04275]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=861184 WCU23_RS23070 WP_000168305.1 4653762..4654298(-) (ssb) [Escherichia coli strain GN04275]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489