Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q2K57_RS08895 Genome accession   NZ_CP130701
Coordinates   1986434..1987084 (+) Length   216 a.a.
NCBI ID   WP_304524868.1    Uniprot ID   -
Organism   Halomonas sp. I5-271120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1981434..1992084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2K57_RS08885 uvrA 1981976..1984828 (-) 2853 WP_304524867.1 excinuclease ABC subunit UvrA -
  Q2K57_RS08890 - 1985002..1986378 (+) 1377 WP_112056028.1 MFS transporter -
  Q2K57_RS08895 ssb 1986434..1987084 (+) 651 WP_304524868.1 single-stranded DNA-binding protein Machinery gene
  Q2K57_RS08900 - 1987134..1988030 (+) 897 WP_304524869.1 sugar nucleotide-binding protein -
  Q2K57_RS08905 - 1988027..1988782 (+) 756 WP_112056031.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  Q2K57_RS08910 fabB 1988955..1990172 (-) 1218 WP_112056032.1 beta-ketoacyl-ACP synthase I -
  Q2K57_RS08915 fabA 1990186..1990701 (-) 516 WP_092527144.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23401.45 Da        Isoelectric Point: 5.2239

>NTDB_id=861094 Q2K57_RS08895 WP_304524868.1 1986434..1987084(+) (ssb) [Halomonas sp. I5-271120]
MARGVNKVILIGNLGQDPEVRFLPSGNPVANLRIATTDSWTDRQSGQRQERTEWHTVVLFNKLAEIAQQYVKKGSRIYVE
GRLQTRKWQGQDGQDRYSTEIVCNDMQMLDSRSGGQGGSPQNDPQGGNYAGGMNQGGMPQGNAAQQGGGAGNYGNAPQQP
PQGNNYGQQGGPQQGGQPQRPPQQPPQQPPQQPQQGNNFGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=861094 Q2K57_RS08895 WP_304524868.1 1986434..1987084(+) (ssb) [Halomonas sp. I5-271120]
ATGGCCCGTGGTGTAAACAAGGTCATCCTGATCGGCAATCTGGGCCAGGACCCGGAAGTACGTTTTCTGCCTTCCGGCAA
CCCGGTCGCCAACCTGCGCATCGCCACCACCGACAGCTGGACTGATCGCCAGAGCGGGCAGCGCCAGGAGCGCACCGAGT
GGCACACAGTGGTGCTGTTCAACAAGCTCGCCGAGATCGCTCAGCAGTACGTCAAGAAAGGCTCACGCATTTATGTCGAA
GGTCGTCTGCAGACCCGCAAATGGCAGGGTCAGGACGGTCAGGATCGCTATTCCACCGAGATCGTCTGCAACGATATGCA
GATGCTCGACTCGCGAAGCGGCGGTCAGGGTGGCTCCCCGCAGAACGATCCTCAGGGGGGCAACTATGCGGGCGGCATGA
ACCAGGGCGGCATGCCGCAGGGTAATGCTGCTCAGCAGGGTGGCGGTGCCGGCAACTACGGCAACGCGCCCCAGCAGCCT
CCCCAGGGCAACAATTATGGTCAGCAAGGCGGCCCGCAGCAGGGCGGACAGCCCCAGCGCCCGCCGCAGCAGCCGCCCCA
GCAGCCGCCCCAGCAGCCGCAGCAGGGTAACAACTTCGGCGCACCGAATCCGGGCAGCTTCGACGACTTCGATGATGAGA
TTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.858

100

0.495
  ssb Glaesserella parasuis strain SC1401

46.009

98.611

0.454
  ssb Neisseria gonorrhoeae MS11

40.376

98.611

0.398
  ssb Neisseria meningitidis MC58

39.906

98.611

0.394