Detailed information NTG0861043

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q5M89_RS01250
• Genome accession: NZ_CP130693
• Coordinates: 142389..143189 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain SP1030
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 137389..148189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q5M89_RS01215 (Q5M89_01215)	gspH	137545..138060 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
Q5M89_RS01220 (Q5M89_01220)	gspI	138057..138422 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
Q5M89_RS01225 (Q5M89_01225)	gspJ	138419..139015 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
Q5M89_RS01230 (Q5M89_01230)	gspK	139012..139998 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
Q5M89_RS01235 (Q5M89_01235)	gspL	139985..141178 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
Q5M89_RS01240 (Q5M89_01240)	-	141171..141656 (+)	486	WP_004151943.1	type II secretion system protein M	-
Q5M89_RS01245 (Q5M89_01245)	-	141646..142392 (+)	747	WP_004145897.1	type II secretion system protein N	-
Q5M89_RS01250 (Q5M89_01250)	pilD	142389..143189 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
Q5M89_RS01255 (Q5M89_01255)	hrpB	143237..145666 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
Q5M89_RS01260 (Q5M89_01260)	thpR	145739..146275 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
Q5M89_RS01265 (Q5M89_01265)	sfsA	146275..146991 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
Q5M89_RS01270 (Q5M89_01270)	dksA	147154..147609 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=861043 Q5M89_RS01250 WP_002888947.1 142389..143189(+) (pilD) [Klebsiella pneumoniae strain SP1030]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=861043 Q5M89_RS01250 WP_002888947.1 142389..143189(+) (pilD) [Klebsiella pneumoniae strain SP1030]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425