Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QJR74_RS01720 Genome accession   NZ_CP130649
Coordinates   333872..334402 (+) Length   176 a.a.
NCBI ID   WP_099825125.1    Uniprot ID   -
Organism   Tatumella ptyseos strain Sample4_4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 328872..339402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR74_RS01705 (QJR74_01705) - 329251..329673 (+) 423 WP_304372900.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  QJR74_RS01710 (QJR74_01710) - 329712..330764 (-) 1053 WP_304372901.1 NAD(P)-dependent alcohol dehydrogenase -
  QJR74_RS01715 (QJR74_01715) uvrA 330819..333647 (-) 2829 WP_304372902.1 excinuclease ABC subunit UvrA -
  QJR74_RS01720 (QJR74_01720) ssb 333872..334402 (+) 531 WP_099825125.1 single-stranded DNA-binding protein Machinery gene
  QJR74_RS01725 (QJR74_01725) tssH 334890..337514 (+) 2625 WP_304372903.1 type VI secretion system ATPase TssH -
  QJR74_RS01730 (QJR74_01730) - 337845..338093 (+) 249 WP_304373936.1 YtcA family lipoprotein -
  QJR74_RS01735 (QJR74_01735) mdtN 338100..339140 (+) 1041 WP_304372904.1 multidrug transporter subunit MdtN -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18884.81 Da        Isoelectric Point: 5.2358

>NTDB_id=860881 QJR74_RS01720 WP_099825125.1 333872..334402(+) (ssb) [Tatumella ptyseos strain Sample4_4]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVTNITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVNVGGTMQMLGGRQGNNAPQGGGAPNNNNGWGQPQQPQSSGAQFSGGGQAPQSPKAP
AGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=860881 QJR74_RS01720 WP_099825125.1 333872..334402(+) (ssb) [Tatumella ptyseos strain Sample4_4]
ATGGCCAGTCGCGGCGTAAACAAAGTGATTCTTGTCGGTAATTTGGGTCAAGATCCAGAAGTCCGGTATATGCCAAATGG
AGGAGCTGTGACAAACATTACGCTGGCAACCTCTGAAAGCTGGCGTGATAAGCAAACCGGTGAAAATAAAGAAATTACTG
AATGGCACCGTGTTGTGCTGTTCGGAAAATTAGCGGAAGTTGCAGGGGAATACCTGCGTAAAGGCTCTCAAGTTTATATC
GAAGGGCAGCTGCGTACCCGCAAATGGCAAGACCAAGGTGGTCAAGATCGCTACACCACTGAAGTCGTTGTTAATGTCGG
TGGCACCATGCAAATGTTAGGTGGCCGTCAAGGTAACAACGCTCCTCAAGGCGGCGGTGCACCAAACAATAATAATGGTT
GGGGGCAGCCACAACAGCCACAATCTTCTGGCGCGCAATTTAGTGGTGGTGGACAAGCTCCACAGTCGCCTAAAGCGCCT
GCTGGCGGCAACGAGCCACCCATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.527

100

0.75
  ssb Glaesserella parasuis strain SC1401

55.738

100

0.58
  ssb Neisseria meningitidis MC58

47.514

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.489