Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q3Y66_RS00410 Genome accession   NZ_CP130610
Coordinates   97066..97695 (+) Length   209 a.a.
NCBI ID   WP_008959208.1    Uniprot ID   G4FAB6
Organism   Halomonas sp. HAL1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 92066..102695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y66_RS00400 (Q3Y66_00400) uvrA 92561..95407 (-) 2847 WP_008959210.1 excinuclease ABC subunit UvrA -
  Q3Y66_RS00405 (Q3Y66_00405) - 95612..96991 (+) 1380 WP_008959209.1 MFS transporter -
  Q3Y66_RS00410 (Q3Y66_00410) ssb 97066..97695 (+) 630 WP_008959208.1 single-stranded DNA-binding protein Machinery gene
  Q3Y66_RS00415 (Q3Y66_00415) - 97749..98639 (+) 891 WP_008959207.1 sugar nucleotide-binding protein -
  Q3Y66_RS00420 (Q3Y66_00420) - 98636..99379 (+) 744 WP_008959206.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  Q3Y66_RS00425 (Q3Y66_00425) fabB 99491..100708 (-) 1218 WP_008959205.1 beta-ketoacyl-ACP synthase I -
  Q3Y66_RS00430 (Q3Y66_00430) fabA 100722..101237 (-) 516 WP_008959204.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22812.76 Da        Isoelectric Point: 4.7599

>NTDB_id=860629 Q3Y66_RS00410 WP_008959208.1 97066..97695(+) (ssb) [Halomonas sp. HAL1]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRSGDFQGGGAGQNSYPQNAPQNAPQNAPAPNNQGGGYPQQGGAPQGGNY
PDGQSPQQPRPAQPAPQQGNQAPPPNQQNSSYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 630 bp        

>NTDB_id=860629 Q3Y66_RS00410 WP_008959208.1 97066..97695(+) (ssb) [Halomonas sp. HAL1]
ATGGCTCGCGGCATTAACAAGGTCATCTTGATTGGCAACCTCGGGCAGGATCCAGAGGTGCGTTTCACTCCAAGCGGTAC
CGCCGTGGCGAATTTGAACCTGGCGACCACCGATACCTGGATGGATCGCCAGAGCGGCCAGCGCCAGGAGCGTACCGAAT
GGCACCGCGTGGTAATGTTCAATAAAACCGCCGAAATTGCCCAGCAGTACCTGAAAAAAGGCTCCAAAGTCTATATTGAA
GGGCGCCTGCAAACTCGTAAGTGGCAGGATCAAAACGGCCAGGATCGCTATTCGACAGAGATTGTCGCCAACGATATGCA
AATGCTTGATGGTCGCAGTGGTGACTTCCAAGGTGGAGGCGCCGGGCAAAACAGCTATCCCCAGAACGCTCCTCAGAATG
CGCCCCAAAACGCGCCGGCCCCCAATAACCAAGGCGGCGGTTATCCGCAGCAGGGCGGTGCTCCTCAGGGCGGAAACTAC
CCAGACGGGCAGAGCCCACAGCAGCCTCGCCCCGCACAGCCAGCGCCCCAGCAGGGCAACCAAGCACCGCCGCCCAACCA
GCAGAACAGCAGCTACGGTGCGCCGGACCCGGGTAACTTCGACGACTTTGACGATGAGATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4FAB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.664

100

0.488
  ssb Glaesserella parasuis strain SC1401

48.571

100

0.488
  ssb Neisseria gonorrhoeae MS11

44.66

98.565

0.44
  ssb Neisseria meningitidis MC58

43.204

98.565

0.426