Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LC603172_RS09935 Genome accession   NZ_AP024565
Coordinates   2011037..2011402 (-) Length   121 a.a.
NCBI ID   WP_002798118.1    Uniprot ID   -
Organism   Microcystis aeruginosa strain NIES-88     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2006037..2016402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC603172_RS09915 - 2006067..2006312 (+) 246 WP_155726803.1 hypothetical protein -
  LC603172_RS09920 (MAN88_19230) - 2006362..2007573 (-) 1212 WP_061433350.1 glycosyltransferase -
  LC603172_RS09925 (MAN88_19240) - 2007647..2010325 (-) 2679 WP_061433349.1 methyl-accepting chemotaxis protein -
  LC603172_RS09930 (MAN88_19250) - 2010415..2010945 (-) 531 WP_061433348.1 chemotaxis protein CheW -
  LC603172_RS09935 (MAN88_19260) pilH 2011037..2011402 (-) 366 WP_002798118.1 response regulator transcription factor Machinery gene
  LC603172_RS09940 (MAN88_19270) - 2012782..2014113 (+) 1332 WP_061433347.1 RNA-guided endonuclease TnpB family protein -
  LC603172_RS09945 (MAN88_19280) hmpF 2014092..2015240 (+) 1149 Protein_2000 pilus motility taxis protein HmpF -
  LC603172_RS09950 (MAN88_19290) - 2015340..2016326 (+) 987 WP_221275333.1 IS30-like element ISMae39 family transposase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13879.30 Da        Isoelectric Point: 6.9277

>NTDB_id=86029 LC603172_RS09935 WP_002798118.1 2011037..2011402(-) (pilH) [Microcystis aeruginosa strain NIES-88]
MSEILLVEDSQTQRELICDLLRNSGIKVTIATDGVEALEHIQRANPDLVVLDIVMPRMNGYEVCRRLKSDPKTKNVPVVI
CSLKGEVFDRYWGMKIGADAYIVKPFEPIEFIYTIKQLLRR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=86029 LC603172_RS09935 WP_002798118.1 2011037..2011402(-) (pilH) [Microcystis aeruginosa strain NIES-88]
ATGAGCGAAATATTGCTGGTAGAAGACAGCCAAACGCAAAGGGAACTGATCTGTGATCTACTCCGCAATAGCGGCATTAA
GGTCACGATCGCCACGGATGGGGTGGAAGCCCTCGAACATATTCAGAGAGCCAATCCGGATCTCGTCGTCCTCGATATCG
TCATGCCCCGCATGAATGGTTATGAGGTGTGTCGTCGTCTCAAGTCGGATCCAAAAACCAAAAATGTCCCAGTGGTCATT
TGTTCCTTGAAAGGGGAAGTCTTTGATCGCTATTGGGGCATGAAAATCGGAGCCGATGCCTACATTGTCAAGCCCTTTGA
ACCGATTGAGTTCATTTATACCATTAAACAACTGTTGCGCCGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

71.667

99.174

0.711
  vicR Streptococcus mutans UA159

37.19

100

0.372
  pilG Acinetobacter baumannii strain A118

39.13

95.041

0.372
  micA Streptococcus pneumoniae Cp1015

36.364

100

0.364

Multiple sequence alignment