Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | Atep_RS07515 | Genome accession | NZ_AP024563 |
| Coordinates | 1555755..1557089 (+) | Length | 444 a.a. |
| NCBI ID | WP_213381251.1 | Uniprot ID | - |
| Organism | Allochromatium tepidum strain NZ | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1550755..1562089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Atep_RS07500 (Atep_14630) | msrA | 1552728..1553282 (+) | 555 | WP_213381244.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
| Atep_RS07505 (Atep_14640) | - | 1553304..1554422 (+) | 1119 | WP_213381246.1 | phosphoserine transaminase | - |
| Atep_RS07510 (Atep_14650) | - | 1554412..1555629 (+) | 1218 | WP_236786618.1 | ATP-grasp domain-containing protein | - |
| Atep_RS07515 (Atep_14660) | pilR | 1555755..1557089 (+) | 1335 | WP_213381251.1 | sigma-54-dependent transcriptional regulator | Regulator |
| Atep_RS07520 (Atep_14670) | cas6 | 1557164..1557868 (-) | 705 | WP_213381253.1 | type I-MYXAN CRISPR-associated protein Cas6/Cmx6 | - |
| Atep_RS07525 (Atep_14680) | - | 1557905..1558621 (-) | 717 | WP_213381254.1 | hypothetical protein | - |
| Atep_RS07530 (Atep_14690) | - | 1558668..1558859 (-) | 192 | WP_155448681.1 | sulfur relay protein DsrC | - |
| Atep_RS07535 (Atep_14700) | dsrA | 1559430..1560683 (+) | 1254 | WP_213381256.1 | dissimilatory-type sulfite reductase subunit alpha | - |
| Atep_RS07540 (Atep_14710) | dsrB | 1560738..1561808 (+) | 1071 | WP_213381257.1 | dissimilatory-type sulfite reductase subunit beta | - |
Sequence
Protein
Download Length: 444 a.a. Molecular weight: 48234.55 Da Isoelectric Point: 6.1984
>NTDB_id=86019 Atep_RS07515 WP_213381251.1 1555755..1557089(+) (pilR) [Allochromatium tepidum strain NZ]
MPKPLALVVDDEADILDLIRITLGRMDVSAVTALTVAEAKLQLERHRPDLCLTDLSLPDGTGLDLLHHINAHHPELPVAM
ITAHGNMESAVAAMKAGAFDFVAKPVDLAALRNLVESALRLRRRAAPAGEPESVETDQPLLGDSPAMQQIRTLIAKLART
QAPVFITGESGTGKELAARLIHALGPRRDGPFVPVNCGAIPHDLVESELFGHKKGSFTGAVADKDGLFQAAGGGTLFLDE
LADLPLPAQVKLLRAIQEKCVRPVGAAREVPVDVRLISASHRDLAREVEKGRFRQDLFYRINVIELRLPALRERPEDIRP
LAAHILRRLARTVGGAGEPTAVDPRLSEEAIAALVRYAFPGNVRELENILERAVALCEGERIEVEDLYLPANERPGVLES
TGPARVALDQAHWNQATARAFGMTPLAFRYSLARLGIDHYIPCD
MPKPLALVVDDEADILDLIRITLGRMDVSAVTALTVAEAKLQLERHRPDLCLTDLSLPDGTGLDLLHHINAHHPELPVAM
ITAHGNMESAVAAMKAGAFDFVAKPVDLAALRNLVESALRLRRRAAPAGEPESVETDQPLLGDSPAMQQIRTLIAKLART
QAPVFITGESGTGKELAARLIHALGPRRDGPFVPVNCGAIPHDLVESELFGHKKGSFTGAVADKDGLFQAAGGGTLFLDE
LADLPLPAQVKLLRAIQEKCVRPVGAAREVPVDVRLISASHRDLAREVEKGRFRQDLFYRINVIELRLPALRERPEDIRP
LAAHILRRLARTVGGAGEPTAVDPRLSEEAIAALVRYAFPGNVRELENILERAVALCEGERIEVEDLYLPANERPGVLES
TGPARVALDQAHWNQATARAFGMTPLAFRYSLARLGIDHYIPCD
Nucleotide
Download Length: 1335 bp
>NTDB_id=86019 Atep_RS07515 WP_213381251.1 1555755..1557089(+) (pilR) [Allochromatium tepidum strain NZ]
ATGCCCAAGCCGCTAGCGCTCGTCGTCGACGACGAAGCCGACATCCTCGACCTGATCCGCATCACGCTCGGGCGCATGGA
CGTGTCGGCCGTCACTGCGCTGACGGTCGCCGAGGCCAAGCTTCAACTGGAGCGTCATCGGCCCGATCTCTGTCTCACCG
ATCTGAGTCTGCCGGACGGCACCGGGCTCGATCTGCTGCACCACATCAACGCCCATCACCCCGAGCTGCCGGTGGCCATG
ATCACTGCACACGGCAACATGGAATCGGCCGTCGCCGCCATGAAGGCCGGGGCCTTCGATTTCGTGGCCAAGCCGGTCGA
TCTGGCCGCTTTGCGCAATCTCGTCGAATCGGCGCTCAGGCTGCGTCGGCGTGCCGCACCGGCTGGGGAACCGGAGTCTG
TCGAGACCGACCAGCCCCTGCTCGGCGACTCGCCCGCGATGCAGCAGATTCGTACCCTGATCGCCAAGCTCGCCCGCACT
CAGGCGCCGGTCTTCATCACCGGCGAGAGCGGCACCGGCAAGGAACTGGCGGCACGTCTGATCCATGCGCTGGGACCACG
TCGCGATGGTCCCTTCGTGCCGGTCAACTGTGGGGCCATCCCGCACGATCTGGTCGAAAGCGAGCTGTTCGGGCACAAGA
AGGGCAGTTTCACCGGCGCGGTGGCCGACAAGGACGGACTGTTCCAGGCCGCCGGCGGCGGGACGCTCTTTCTCGACGAG
CTGGCCGATCTGCCCCTTCCGGCGCAGGTCAAGCTGTTGCGCGCCATCCAGGAGAAGTGCGTGCGTCCGGTCGGGGCCGC
GCGTGAGGTTCCGGTCGATGTGCGGCTCATCAGCGCCAGTCATCGTGATCTCGCCCGGGAGGTCGAGAAGGGGCGCTTTC
GGCAGGATCTCTTCTATCGAATCAATGTCATCGAACTGCGTCTGCCCGCGTTGCGCGAGCGTCCCGAGGATATCCGCCCG
CTGGCGGCCCATATCCTGCGCAGACTCGCTCGGACGGTTGGGGGGGCGGGCGAGCCGACGGCGGTCGATCCGAGGCTCTC
CGAAGAGGCTATCGCGGCGCTCGTGCGCTATGCCTTCCCCGGCAATGTGCGCGAACTCGAAAACATTCTGGAGCGCGCCG
TGGCGCTGTGCGAGGGCGAGCGCATCGAGGTCGAGGATCTCTATCTGCCCGCCAATGAACGCCCGGGCGTGCTCGAATCC
ACGGGGCCGGCGCGGGTGGCGCTCGATCAGGCGCACTGGAACCAGGCGACCGCTCGCGCGTTCGGTATGACCCCGCTGGC
GTTCAGATATAGTTTGGCCAGACTCGGGATCGATCATTACATCCCGTGTGATTGA
ATGCCCAAGCCGCTAGCGCTCGTCGTCGACGACGAAGCCGACATCCTCGACCTGATCCGCATCACGCTCGGGCGCATGGA
CGTGTCGGCCGTCACTGCGCTGACGGTCGCCGAGGCCAAGCTTCAACTGGAGCGTCATCGGCCCGATCTCTGTCTCACCG
ATCTGAGTCTGCCGGACGGCACCGGGCTCGATCTGCTGCACCACATCAACGCCCATCACCCCGAGCTGCCGGTGGCCATG
ATCACTGCACACGGCAACATGGAATCGGCCGTCGCCGCCATGAAGGCCGGGGCCTTCGATTTCGTGGCCAAGCCGGTCGA
TCTGGCCGCTTTGCGCAATCTCGTCGAATCGGCGCTCAGGCTGCGTCGGCGTGCCGCACCGGCTGGGGAACCGGAGTCTG
TCGAGACCGACCAGCCCCTGCTCGGCGACTCGCCCGCGATGCAGCAGATTCGTACCCTGATCGCCAAGCTCGCCCGCACT
CAGGCGCCGGTCTTCATCACCGGCGAGAGCGGCACCGGCAAGGAACTGGCGGCACGTCTGATCCATGCGCTGGGACCACG
TCGCGATGGTCCCTTCGTGCCGGTCAACTGTGGGGCCATCCCGCACGATCTGGTCGAAAGCGAGCTGTTCGGGCACAAGA
AGGGCAGTTTCACCGGCGCGGTGGCCGACAAGGACGGACTGTTCCAGGCCGCCGGCGGCGGGACGCTCTTTCTCGACGAG
CTGGCCGATCTGCCCCTTCCGGCGCAGGTCAAGCTGTTGCGCGCCATCCAGGAGAAGTGCGTGCGTCCGGTCGGGGCCGC
GCGTGAGGTTCCGGTCGATGTGCGGCTCATCAGCGCCAGTCATCGTGATCTCGCCCGGGAGGTCGAGAAGGGGCGCTTTC
GGCAGGATCTCTTCTATCGAATCAATGTCATCGAACTGCGTCTGCCCGCGTTGCGCGAGCGTCCCGAGGATATCCGCCCG
CTGGCGGCCCATATCCTGCGCAGACTCGCTCGGACGGTTGGGGGGGCGGGCGAGCCGACGGCGGTCGATCCGAGGCTCTC
CGAAGAGGCTATCGCGGCGCTCGTGCGCTATGCCTTCCCCGGCAATGTGCGCGAACTCGAAAACATTCTGGAGCGCGCCG
TGGCGCTGTGCGAGGGCGAGCGCATCGAGGTCGAGGATCTCTATCTGCCCGCCAATGAACGCCCGGGCGTGCTCGAATCC
ACGGGGCCGGCGCGGGTGGCGCTCGATCAGGCGCACTGGAACCAGGCGACCGCTCGCGCGTTCGGTATGACCCCGCTGGC
GTTCAGATATAGTTTGGCCAGACTCGGGATCGATCATTACATCCCGTGTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
56.798 |
100 |
0.583 |
| pilR | Acinetobacter baumannii strain A118 |
46.709 |
100 |
0.495 |
| luxO | Vibrio cholerae strain A1552 |
41.22 |
92.342 |
0.381 |