Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WCU20_RS09220 Genome accession   NZ_CP147541
Coordinates   1969993..1970322 (+) Length   109 a.a.
NCBI ID   WP_031672930.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain GN06288     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1964993..1975322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU20_RS09205 (WCU20_09205) - 1965035..1966054 (+) 1020 WP_003113413.1 glycosyltransferase family 4 protein -
  WCU20_RS09210 (WCU20_09210) - 1966132..1967181 (+) 1050 Protein_1826 IS3 family transposase -
  WCU20_RS09215 (WCU20_09215) - 1967805..1969802 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  WCU20_RS09220 (WCU20_09220) comEA 1969993..1970322 (+) 330 WP_031672930.1 ComEA family DNA-binding protein Machinery gene
  WCU20_RS09230 (WCU20_09230) - 1970539..1971735 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  WCU20_RS09235 (WCU20_09235) uvrB 1971923..1973935 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11324.28 Da        Isoelectric Point: 8.0459

>NTDB_id=860119 WCU20_RS09220 WP_031672930.1 1969993..1970322(+) (comEA) [Pseudomonas aeruginosa strain GN06288]
MHLIKSALLLILFACLPFSASAAPVAVAKSPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=860119 WCU20_RS09220 WP_031672930.1 1969993..1970322(+) (comEA) [Pseudomonas aeruginosa strain GN06288]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAGTCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

38.596

100

0.404
  comEA Vibrio cholerae strain A1552

38.596

100

0.404
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio parahaemolyticus RIMD 2210633

40

91.743

0.367