Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V83_RS09340 Genome accession   NZ_CP130534
Coordinates   1926130..1926600 (-) Length   156 a.a.
NCBI ID   WP_000934772.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA14-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1921130..1931600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V83_RS09275 - 1921442..1921858 (-) 417 WP_000590122.1 hypothetical protein -
  Q3V83_RS09280 - 1921886..1922086 (-) 201 WP_000265043.1 DUF1514 family protein -
  Q3V83_RS09285 - 1922086..1922235 (-) 150 WP_000595265.1 transcriptional activator RinB -
  Q3V83_RS09290 - 1922232..1922618 (-) 387 WP_000592207.1 hypothetical protein -
  Q3V83_RS09295 - 1922615..1922821 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  Q3V83_RS09300 - 1922818..1923063 (-) 246 WP_001282074.1 hypothetical protein -
  Q3V83_RS09305 - 1923100..1923636 (-) 537 WP_303079994.1 dUTPase -
  Q3V83_RS09310 - 1923629..1923877 (-) 249 WP_001065072.1 DUF1024 family protein -
  Q3V83_RS09315 - 1923891..1924133 (-) 243 WP_000131384.1 SAV1978 family virulence-associated passenger protein -
  Q3V83_RS09320 - 1924137..1924505 (-) 369 WP_000101275.1 SA1788 family PVL leukocidin-associated protein -
  Q3V83_RS09325 - 1924518..1924973 (-) 456 WP_000401965.1 RusA family crossover junction endodeoxyribonuclease -
  Q3V83_RS09330 - 1924982..1925200 (-) 219 WP_000338528.1 hypothetical protein -
  Q3V83_RS09335 - 1925207..1926100 (-) 894 WP_031770227.1 DnaD domain-containing protein -
  Q3V83_RS09340 ssbA 1926130..1926600 (-) 471 WP_000934772.1 single-stranded DNA-binding protein Machinery gene
  Q3V83_RS09345 - 1926601..1927218 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  Q3V83_RS09350 - 1927299..1928219 (-) 921 WP_000138475.1 recombinase RecT -
  Q3V83_RS09355 - 1928221..1930163 (-) 1943 Protein_1845 AAA family ATPase -
  Q3V83_RS09360 - 1930172..1930435 (-) 264 WP_001205732.1 hypothetical protein -
  Q3V83_RS09365 - 1930444..1930704 (-) 261 WP_072456798.1 DUF1108 family protein -
  Q3V83_RS09370 - 1930709..1931010 (-) 302 Protein_1848 DUF2482 family protein -
  Q3V83_RS09375 - 1931102..1931263 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  Q3V83_RS09380 - 1931260..1931580 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17657.52 Da        Isoelectric Point: 5.2672

>NTDB_id=859764 Q3V83_RS09340 WP_000934772.1 1926130..1926600(-) (ssbA) [Staphylococcus aureus strain SA14-SX]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=859764 Q3V83_RS09340 WP_000934772.1 1926130..1926600(-) (ssbA) [Staphylococcus aureus strain SA14-SX]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Vibrio cholerae strain A1552

31.492

100

0.365