Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q3V75_RS05715 Genome accession   NZ_CP130529
Coordinates   1196366..1197238 (+) Length   290 a.a.
NCBI ID   WP_000620187.1    Uniprot ID   A0AAE2ZTP9
Organism   Staphylococcus aureus strain SA17-SX     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1191366..1202238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V75_RS05695 sucC 1191480..1192646 (+) 1167 WP_001020802.1 ADP-forming succinate--CoA ligase subunit beta -
  Q3V75_RS05700 sucD 1192668..1193576 (+) 909 WP_031877730.1 succinate--CoA ligase subunit alpha -
  Q3V75_RS05705 - 1193803..1194921 (+) 1119 WP_001041672.1 LysM peptidoglycan-binding domain-containing protein -
  Q3V75_RS05710 fmhC 1194949..1196193 (+) 1245 WP_000673439.1 FemA/FemB family glycyltransferase FmhC -
  Q3V75_RS05715 dprA 1196366..1197238 (+) 873 WP_000620187.1 DNA-processing protein DprA Machinery gene
  Q3V75_RS05720 topA 1197412..1199487 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  Q3V75_RS05725 trmFO 1199643..1200950 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33609.00 Da        Isoelectric Point: 9.5142

>NTDB_id=859617 Q3V75_RS05715 WP_000620187.1 1196366..1197238(+) (dprA) [Staphylococcus aureus strain SA17-SX]
MIRLFLLKLYWSHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=859617 Q3V75_RS05715 WP_000620187.1 1196366..1197238(+) (dprA) [Staphylococcus aureus strain SA17-SX]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGTCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA Staphylococcus aureus N315

98.966

100

0.99
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae D39

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae R6

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.163

97.586

0.372
  dprA/cilB/dalA Streptococcus mitis SK321

37.809

97.586

0.369