Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   Q3V60_RS07560 Genome accession   NZ_CP130516
Coordinates   1570715..1571212 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565715..1576212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS07535 gcvPB 1565877..1567349 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  Q3V60_RS07540 gcvPA 1567342..1568688 (-) 1347 WP_077156047.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V60_RS07545 gcvT 1568708..1569799 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V60_RS07550 - 1569958..1570482 (-) 525 WP_001015121.1 shikimate kinase -
  Q3V60_RS07555 - 1570472..1570618 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V60_RS07560 comGF 1570715..1571212 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V60_RS07565 comGE 1571130..1571429 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  Q3V60_RS07570 comGD 1571416..1571862 (-) 447 WP_303062040.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V60_RS07575 comGC 1571840..1572151 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V60_RS07580 comGB 1572165..1573235 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V60_RS07585 comGA 1573207..1574181 (-) 975 WP_000697219.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V60_RS07590 - 1574233..1574856 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V60_RS07595 - 1574853..1575182 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V60_RS07600 - 1575182..1576168 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=859187 Q3V60_RS07560 WP_029694050.1 1570715..1571212(-) (comGF) [Staphylococcus aureus strain SA27-SX]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=859187 Q3V60_RS07560 WP_029694050.1 1570715..1571212(-) (comGF) [Staphylococcus aureus strain SA27-SX]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97