Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   Q3V60_RS07580 Genome accession   NZ_CP130516
Coordinates   1572165..1573235 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA27-SX     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567165..1578235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS07540 gcvPA 1567342..1568688 (-) 1347 WP_077156047.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  Q3V60_RS07545 gcvT 1568708..1569799 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3V60_RS07550 - 1569958..1570482 (-) 525 WP_001015121.1 shikimate kinase -
  Q3V60_RS07555 - 1570472..1570618 (-) 147 WP_001789879.1 hypothetical protein -
  Q3V60_RS07560 comGF 1570715..1571212 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q3V60_RS07565 comGE 1571130..1571429 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  Q3V60_RS07570 comGD 1571416..1571862 (-) 447 WP_303062040.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3V60_RS07575 comGC 1571840..1572151 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  Q3V60_RS07580 comGB 1572165..1573235 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q3V60_RS07585 comGA 1573207..1574181 (-) 975 WP_000697219.1 competence type IV pilus ATPase ComGA Machinery gene
  Q3V60_RS07590 - 1574233..1574856 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  Q3V60_RS07595 - 1574853..1575182 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  Q3V60_RS07600 - 1575182..1576168 (-) 987 WP_000161315.1 ROK family glucokinase -
  Q3V60_RS07605 - 1576165..1576368 (-) 204 WP_000087561.1 YqgQ family protein -
  Q3V60_RS07610 - 1576349..1577812 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=859191 Q3V60_RS07580 WP_000776422.1 1572165..1573235(-) (comGB) [Staphylococcus aureus strain SA27-SX]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=859191 Q3V60_RS07580 WP_000776422.1 1572165..1573235(-) (comGB) [Staphylococcus aureus strain SA27-SX]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1