Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V60_RS01720 Genome accession   NZ_CP130516
Coordinates   383329..383832 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain SA27-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 383329..404490 383329..383832 within 0


Gene organization within MGE regions


Location: 383329..404490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V60_RS01720 ssbA 383329..383832 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  Q3V60_RS01725 rpsR 383884..384126 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  Q3V60_RS01730 - 384355..385152 (-) 798 WP_117196620.1 type II toxin-antitoxin system PemK/MazF family toxin -
  Q3V60_RS01735 - 385176..386390 (-) 1215 WP_048665650.1 site-specific integrase -
  Q3V60_RS01740 - 386652..387377 (-) 726 WP_000668215.1 helix-turn-helix domain-containing protein -
  Q3V60_RS01745 - 387549..387761 (+) 213 WP_001245562.1 helix-turn-helix transcriptional regulator -
  Q3V60_RS01750 - 387762..388034 (+) 273 WP_001138300.1 helix-turn-helix domain-containing protein -
  Q3V60_RS01755 - 388046..388201 (+) 156 WP_000784886.1 hypothetical protein -
  Q3V60_RS01760 - 388186..388431 (+) 246 WP_001171847.1 hypothetical protein -
  Q3V60_RS01765 - 388391..388774 (+) 384 WP_000403843.1 hypothetical protein -
  Q3V60_RS01770 - 388775..389074 (+) 300 WP_048665656.1 DUF1474 family protein -
  Q3V60_RS01775 - 389149..390762 (+) 1614 WP_224103548.1 phage resistance protein -
  Q3V60_RS01780 - 390933..391736 (+) 804 WP_000148371.1 bifunctional DNA primase/polymerase -
  Q3V60_RS01785 - 391723..391995 (+) 273 WP_224103549.1 pathogenicity island protein -
  Q3V60_RS01790 - 391997..392638 (+) 642 WP_224103550.1 pathogenicity island protein -
  Q3V60_RS01795 - 393212..393553 (+) 342 WP_001161659.1 hypothetical protein -
  Q3V60_RS01800 - 393565..394143 (+) 579 WP_000846290.1 hypothetical protein -
  Q3V60_RS01805 - 394161..394379 (+) 219 WP_000448775.1 capsid morphogenesis B protein -
  Q3V60_RS01810 - 394430..394957 (+) 528 WP_000771356.1 spore coat protein -
  Q3V60_RS01815 - 394960..395301 (+) 342 WP_117206166.1 pathogenicity island protein -
  Q3V60_RS01820 - 395298..395867 (+) 570 WP_117206167.1 terminase small subunit -
  Q3V60_RS01825 - 395942..396301 (-) 360 WP_000935290.1 hypothetical protein -
  Q3V60_RS01830 - 396418..396807 (-) 390 WP_000362902.1 hypothetical protein -
  Q3V60_RS01835 - 396809..398021 (-) 1213 Protein_364 hypothetical protein -
  Q3V60_RS01840 - 398048..398440 (+) 393 WP_164095141.1 DUF1433 domain-containing protein -
  Q3V60_RS01845 - 398559..399002 (+) 444 WP_000022885.1 GNAT family N-acetyltransferase -
  Q3V60_RS01850 - 399234..399428 (+) 195 WP_234770516.1 hypothetical protein -
  Q3V60_RS01855 - 399552..400490 (-) 939 WP_072426475.1 Abi family protein -
  Q3V60_RS01860 - 400529..401238 (-) 710 Protein_369 tyrosine-type recombinase/integrase -
  Q3V60_RS01865 selX 401438..402049 (+) 612 WP_000475329.1 staphylococcal enterotoxin-like toxin X -
  Q3V60_RS01870 - 402418..402786 (+) 369 WP_000849176.1 YxeA family protein -
  Q3V60_RS01875 - 402966..403538 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  Q3V60_RS01880 - 403676..403939 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -
  Q3V60_RS01885 - 404239..404490 (+) 252 WP_000466743.1 GlsB/YeaQ/YmgE family stress response membrane protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=859172 Q3V60_RS01720 WP_000934799.1 383329..383832(+) (ssbA) [Staphylococcus aureus strain SA27-SX]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=859172 Q3V60_RS01720 WP_000934799.1 383329..383832(+) (ssbA) [Staphylococcus aureus strain SA27-SX]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGCGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365