Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V77_RS09430 Genome accession   NZ_CP130503
Coordinates   1938603..1939073 (-) Length   156 a.a.
NCBI ID   WP_047214707.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SA36-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1933603..1944073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V77_RS09360 - 1933609..1933998 (-) 390 WP_170267442.1 hypothetical protein -
  Q3V77_RS09365 - 1933988..1934224 (-) 237 WP_000608274.1 hypothetical protein -
  Q3V77_RS09370 - 1934217..1934420 (-) 204 WP_001072795.1 hypothetical protein -
  Q3V77_RS09375 - 1934417..1934611 (-) 195 WP_000132920.1 hypothetical protein -
  Q3V77_RS09380 - 1934608..1934814 (-) 207 WP_000195779.1 DUF1381 domain-containing protein -
  Q3V77_RS09385 - 1934851..1935387 (-) 537 WP_001066452.1 dUTPase -
  Q3V77_RS09390 - 1935380..1935628 (-) 249 WP_031879102.1 DUF1024 family protein -
  Q3V77_RS09395 - 1935621..1936010 (-) 390 WP_114621342.1 acetyltransferase -
  Q3V77_RS09400 - 1936007..1936354 (-) 348 WP_114621341.1 YopX family protein -
  Q3V77_RS09405 - 1936418..1936666 (-) 249 WP_114621340.1 phi PVL orf 51-like protein -
  Q3V77_RS09410 - 1936667..1937038 (-) 372 WP_114621339.1 SA1788 family PVL leukocidin-associated protein -
  Q3V77_RS09415 - 1937051..1937455 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  Q3V77_RS09420 - 1937464..1937682 (-) 219 WP_000338530.1 hypothetical protein -
  Q3V77_RS09425 - 1937689..1938573 (-) 885 WP_031833239.1 DnaD domain protein -
  Q3V77_RS09430 ssbA 1938603..1939073 (-) 471 WP_047214707.1 single-stranded DNA-binding protein Machinery gene
  Q3V77_RS09435 - 1939074..1939691 (-) 618 WP_072460574.1 MBL fold metallo-hydrolase -
  Q3V77_RS09440 - 1939772..1940692 (-) 921 WP_000138475.1 recombinase RecT -
  Q3V77_RS09445 - 1940694..1942649 (-) 1956 WP_155557517.1 AAA family ATPase -
  Q3V77_RS09450 - 1942646..1942909 (-) 264 WP_001205732.1 hypothetical protein -
  Q3V77_RS09455 - 1942918..1943178 (-) 261 WP_000291489.1 DUF1108 family protein -
  Q3V77_RS09460 - 1943273..1943434 (-) 162 WP_000048124.1 DUF1270 family protein -
  Q3V77_RS09465 - 1943431..1943751 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  Q3V77_RS09470 - 1943805..1943960 (+) 156 Protein_1871 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17579.36 Da        Isoelectric Point: 4.9327

>NTDB_id=858814 Q3V77_RS09430 WP_047214707.1 1938603..1939073(-) (ssbA) [Staphylococcus aureus strain SA36-SX]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVAEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=858814 Q3V77_RS09430 WP_047214707.1 1938603..1939073(-) (ssbA) [Staphylococcus aureus strain SA36-SX]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTGCTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.452

100

0.686
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365