Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q3V87_RS01745 Genome accession   NZ_CP130502
Coordinates   396732..397235 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain SA37-SX     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 391732..402235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3V87_RS01715 - 392377..392580 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  Q3V87_RS01720 ychF 392592..393689 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  Q3V87_RS01725 istA 393905..395197 (+) 1293 WP_000777467.1 IS21 family transposase -
  Q3V87_RS01730 istB 395190..395951 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  Q3V87_RS01735 - 396007..396171 (-) 165 WP_001052486.1 hypothetical protein -
  Q3V87_RS01740 rpsF 396415..396711 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  Q3V87_RS01745 ssbA 396732..397235 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  Q3V87_RS01750 rpsR 397287..397529 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  Q3V87_RS01755 - 397795..398733 (-) 939 WP_078055966.1 Abi family protein -
  Q3V87_RS01760 - 398772..399493 (-) 722 Protein_350 tyrosine-type recombinase/integrase -
  Q3V87_RS01765 selX 399693..400304 (+) 612 WP_000473142.1 staphylococcal enterotoxin-like toxin X -
  Q3V87_RS01770 - 400673..401041 (+) 369 WP_000849172.1 YxeA family protein -
  Q3V87_RS01775 - 401222..401794 (+) 573 WP_000769719.1 PepSY domain-containing protein -
  Q3V87_RS01780 - 401932..402195 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=858738 Q3V87_RS01745 WP_000934799.1 396732..397235(+) (ssbA) [Staphylococcus aureus strain SA37-SX]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=858738 Q3V87_RS01745 WP_000934799.1 396732..397235(+) (ssbA) [Staphylococcus aureus strain SA37-SX]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAACAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365