Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAZ83_RS18020 Genome accession   NZ_CP147059
Coordinates   3593148..3593684 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain JKHS016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3588148..3598684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ83_RS18000 (WAZ83_18005) soxR 3589876..3590340 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  WAZ83_RS18005 (WAZ83_18010) soxS 3590426..3590749 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WAZ83_RS18010 (WAZ83_18015) pdeC 3590752..3592338 (-) 1587 WP_341858291.1 c-di-GMP phosphodiesterase PdeC -
  WAZ83_RS18015 (WAZ83_18020) yjcB 3592768..3593049 (+) 282 WP_001295689.1 YjcB family protein -
  WAZ83_RS18020 (WAZ83_18025) ssb 3593148..3593684 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WAZ83_RS18025 (WAZ83_18030) uvrA 3593938..3596760 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WAZ83_RS18030 (WAZ83_18035) yjbR 3596795..3597151 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  WAZ83_RS18035 (WAZ83_18040) yjbQ 3597155..3597571 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WAZ83_RS18040 (WAZ83_18045) aphA 3597682..3598395 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=858334 WAZ83_RS18020 WP_000168305.1 3593148..3593684(-) (ssb) [Escherichia coli strain JKHS016]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=858334 WAZ83_RS18020 WP_000168305.1 3593148..3593684(-) (ssb) [Escherichia coli strain JKHS016]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489