Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I0P84_RS14465 Genome accession   NZ_AP024524
Coordinates   3020134..3020718 (-) Length   194 a.a.
NCBI ID   WP_214001696.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3015134..3025718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS14440 (RYU24_28590) - 3015256..3016563 (-) 1308 WP_214001692.1 FAD-dependent oxidoreductase -
  I0P84_RS14445 (RYU24_28600) - 3016978..3017856 (-) 879 WP_214001693.1 pirin family protein -
  I0P84_RS14450 (RYU24_28610) ahpC 3018102..3018665 (-) 564 WP_005232609.1 alkyl hydroperoxide reductase subunit C -
  I0P84_RS14455 (RYU24_28620) - 3018817..3019461 (-) 645 WP_214001694.1 TetR/AcrR family transcriptional regulator -
  I0P84_RS14460 (RYU24_28630) - 3019600..3020064 (+) 465 WP_214001695.1 hotdog fold domain-containing protein -
  I0P84_RS14465 (RYU24_28640) ssb 3020134..3020718 (-) 585 WP_214001696.1 single-stranded DNA-binding protein Machinery gene
  I0P84_RS14470 (RYU24_28650) - 3020770..3022134 (-) 1365 WP_159123704.1 MFS transporter -
  I0P84_RS14475 (RYU24_28660) - 3022259..3023317 (-) 1059 WP_004781556.1 RNA-guided endonuclease InsQ/TnpB family protein -
  I0P84_RS14480 (RYU24_28670) - 3023500..3024591 (-) 1092 WP_004781554.1 DUF475 domain-containing protein -
  I0P84_RS14485 (RYU24_28680) tenA 3024814..3025485 (+) 672 WP_180013819.1 thiaminase II -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21239.95 Da        Isoelectric Point: 6.4819

>NTDB_id=85822 I0P84_RS14465 WP_214001696.1 3020134..3020718(-) (ssb) [Acinetobacter variabilis strain RYU24]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYSNNPQGGYGSAPQQGGFNNNQGSG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=85822 I0P84_RS14465 WP_214001696.1 3020134..3020718(-) (ssb) [Acinetobacter variabilis strain RYU24]
ATGCGTGGTGTTAATAAGGTTATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAGGGCGATAACGGGTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATAGCAATAATCCACAAGGTGGTTATGGCTCAGCGCCTCAGCAAGGCGGTTTTAACAATAATCAAGGCAGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCACCTGCAGCCGA
TCTGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.754

100

0.521
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

38.86

99.485

0.387
  ssb Neisseria gonorrhoeae MS11

38.86

99.485

0.387

Multiple sequence alignment