Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYR01_RS20955 Genome accession   NZ_CP130431
Coordinates   2173782..2174300 (+) Length   172 a.a.
NCBI ID   WP_029924876.1    Uniprot ID   A0A011VB38
Organism   Brucella anthropi strain MWF001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2168782..2179300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR01_RS20950 (QYR01_20950) uvrA 2169865..2172789 (-) 2925 WP_010660138.1 excinuclease ABC subunit UvrA -
  QYR01_RS20955 (QYR01_20955) ssb 2173782..2174300 (+) 519 WP_029924876.1 single-stranded DNA-binding protein Machinery gene
  QYR01_RS20960 (QYR01_20960) arsC 2174417..2174830 (-) 414 WP_105529052.1 arsenate reductase (glutaredoxin) -
  QYR01_RS20965 (QYR01_20965) phnF 2174885..2175658 (-) 774 WP_162998213.1 phosphonate metabolism transcriptional regulator PhnF -
  QYR01_RS20970 (QYR01_20970) phnG 2175873..2176400 (+) 528 WP_105529053.1 phosphonate C-P lyase system protein PhnG -
  QYR01_RS20975 (QYR01_20975) phnH 2176400..2177029 (+) 630 WP_105529054.1 phosphonate C-P lyase system protein PhnH -
  QYR01_RS20980 (QYR01_20980) - 2177032..2178141 (+) 1110 WP_010660131.1 carbon-phosphorus lyase complex subunit PhnI -
  QYR01_RS20985 (QYR01_20985) - 2178138..2179031 (+) 894 WP_105529055.1 alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18607.33 Da        Isoelectric Point: 5.3476

>NTDB_id=858136 QYR01_RS20955 WP_029924876.1 2173782..2174300(+) (ssb) [Brucella anthropi strain MWF001]
MAGSVNKVILVGNLGADPEIRRLNSGDVVANLRIATSESWRDRQSGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEVVLQKFRGELQMLDSRGEGGGEGRSFGGGGGNRNQMSDYSGGGGDFGSSGPSNQGGSSG
GFSRDLDDEIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=858136 QYR01_RS20955 WP_029924876.1 2173782..2174300(+) (ssb) [Brucella anthropi strain MWF001]
ATGGCTGGTAGCGTCAATAAAGTCATTCTGGTCGGCAATCTTGGTGCCGATCCGGAAATTCGTCGTCTGAATTCCGGCGA
CGTGGTTGCCAATCTGCGCATTGCAACGTCGGAAAGCTGGCGCGATCGCCAGAGCGGCGAACGCAAGGACCGCACCGAAT
GGCACAGCGTTGTCATCTTCAATGAAAACCTCGCCAAGGTTGCGGAACAATATCTGAAGAAGGGCGCCAAGGTTTACATC
GAAGGCGCGCTCCAGACCCGCAAATGGCAGGATCAGAACGGCAATGACCGTTATTCGACGGAAGTCGTGCTGCAGAAGTT
CCGTGGTGAGCTGCAGATGCTCGATAGCCGTGGTGAAGGCGGCGGTGAAGGCCGTTCGTTCGGCGGCGGTGGCGGCAACC
GTAACCAGATGTCTGATTATTCCGGTGGCGGCGGTGATTTCGGCTCGTCTGGCCCATCCAATCAGGGTGGCAGCAGCGGT
GGCTTCTCGCGCGATCTGGACGACGAAATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A011VB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.517
  ssb Vibrio cholerae strain A1552

49.714

100

0.506
  ssb Neisseria meningitidis MC58

38.674

100

0.407
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.395