Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QWJ31_RS23795 Genome accession   NZ_CP130340
Coordinates   3191010..3191528 (-) Length   172 a.a.
NCBI ID   WP_053821042.1    Uniprot ID   A0A849BE17
Organism   Cupriavidus gilardii strain M5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3186010..3196528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWJ31_RS23775 (QWJ31_23775) - 3186038..3186412 (+) 375 WP_053821046.1 hypothetical protein -
  QWJ31_RS23780 (QWJ31_23780) - 3186479..3188062 (-) 1584 WP_151023092.1 TerC family protein -
  QWJ31_RS23785 (QWJ31_23785) - 3188205..3189545 (-) 1341 WP_053821044.1 LLM class flavin-dependent oxidoreductase -
  QWJ31_RS23790 (QWJ31_23790) - 3189575..3190792 (-) 1218 WP_053821043.1 acyl-CoA dehydrogenase family protein -
  QWJ31_RS23795 (QWJ31_23795) ssb 3191010..3191528 (-) 519 WP_053821042.1 single-stranded DNA-binding protein Machinery gene
  QWJ31_RS23800 (QWJ31_23800) - 3191716..3192993 (-) 1278 WP_053821041.1 MFS transporter -
  QWJ31_RS23805 (QWJ31_23805) uvrA 3193467..3196364 (+) 2898 WP_053821040.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18217.97 Da        Isoelectric Point: 5.9518

>NTDB_id=858037 QWJ31_RS23795 WP_053821042.1 3191010..3191528(-) (ssb) [Cupriavidus gilardii strain M5]
MASVNKVILVGNLGADPETRYMPSGDAVTNIRLATTDRYKDKQSGDMKELTEWHRVAFFGKLAEIAGQYLRKGSQVYIEG
RIRTRKWQDQSGQDKYSTEIVAEQMQMLGSRQGGGGGGDEGGGYARESSGGGYGGGGRGAQGGGGGGQGGGARRPQQSPS
NGFEDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=858037 QWJ31_RS23795 WP_053821042.1 3191010..3191528(-) (ssb) [Cupriavidus gilardii strain M5]
ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCGGACCCCGAAACGCGCTATATGCCCAGTGGCGATGC
CGTGACCAATATCCGGCTGGCCACCACCGACCGCTACAAGGACAAGCAGAGCGGCGACATGAAGGAGCTGACCGAATGGC
ACCGCGTGGCCTTCTTCGGCAAGCTCGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATATCGAAGGC
CGCATCCGTACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACAGCACGGAAATCGTCGCTGAACAAATGCAGAT
GCTGGGCTCGCGCCAGGGCGGTGGCGGCGGCGGCGACGAAGGCGGCGGCTACGCCCGCGAATCGTCGGGCGGCGGCTATG
GTGGCGGTGGCCGCGGCGCCCAAGGCGGTGGCGGTGGCGGCCAGGGCGGCGGCGCGCGCCGGCCGCAGCAGTCGCCGTCG
AACGGCTTCGAAGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A849BE17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.933

100

0.558
  ssb Glaesserella parasuis strain SC1401

51.111

100

0.535
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.465
  ssb Neisseria meningitidis MC58

45.402

100

0.459