Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Q3F87_RS15295 | Genome accession | NZ_CP130328 |
| Coordinates | 2990404..2990988 (-) | Length | 194 a.a. |
| NCBI ID | WP_004781559.1 | Uniprot ID | N8VKE0 |
| Organism | Acinetobacter variabilis strain TB2-2B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2957940..2993587 | 2990404..2990988 | within | 0 |
Gene organization within MGE regions
Location: 2957940..2993587
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q3F87_RS15120 (Q3F87_15120) | - | 2957940..2959229 (+) | 1290 | WP_180178905.1 | integrase arm-type DNA-binding domain-containing protein | - |
| Q3F87_RS15125 (Q3F87_15125) | - | 2959262..2960302 (+) | 1041 | WP_180159197.1 | hypothetical protein | - |
| Q3F87_RS15130 (Q3F87_15130) | - | 2960427..2960714 (+) | 288 | WP_125278581.1 | AlpA family transcriptional regulator | - |
| Q3F87_RS15135 (Q3F87_15135) | - | 2960717..2961412 (+) | 696 | WP_180025205.1 | phage antirepressor KilAC domain-containing protein | - |
| Q3F87_RS16725 | - | 2961409..2961723 (+) | 315 | Protein_2749 | hypothetical protein | - |
| Q3F87_RS15140 (Q3F87_15140) | - | 2961720..2962277 (+) | 558 | WP_180178904.1 | hypothetical protein | - |
| Q3F87_RS15145 (Q3F87_15145) | - | 2962270..2962446 (+) | 177 | WP_302700121.1 | hypothetical protein | - |
| Q3F87_RS15150 (Q3F87_15150) | - | 2962436..2963200 (+) | 765 | WP_302700123.1 | helix-turn-helix domain-containing protein | - |
| Q3F87_RS15155 (Q3F87_15155) | - | 2963200..2964510 (+) | 1311 | WP_302700124.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| Q3F87_RS15160 (Q3F87_15160) | - | 2964582..2964956 (+) | 375 | WP_302700125.1 | hypothetical protein | - |
| Q3F87_RS15165 (Q3F87_15165) | - | 2965217..2966254 (-) | 1038 | WP_264438140.1 | serine/threonine-protein kinase | - |
| Q3F87_RS15170 (Q3F87_15170) | - | 2966251..2966715 (-) | 465 | WP_264438138.1 | hypothetical protein | - |
| Q3F87_RS15175 (Q3F87_15175) | - | 2966786..2967220 (-) | 435 | WP_302700126.1 | hypothetical protein | - |
| Q3F87_RS15180 (Q3F87_15180) | - | 2967248..2967469 (-) | 222 | WP_180178898.1 | hypothetical protein | - |
| Q3F87_RS15185 (Q3F87_15185) | - | 2967510..2968016 (-) | 507 | WP_302700127.1 | hypothetical protein | - |
| Q3F87_RS15190 (Q3F87_15190) | - | 2968041..2968523 (-) | 483 | WP_180178896.1 | hypothetical protein | - |
| Q3F87_RS15195 (Q3F87_15195) | - | 2968590..2971115 (-) | 2526 | WP_180178895.1 | hypothetical protein | - |
| Q3F87_RS15200 (Q3F87_15200) | - | 2971112..2973691 (-) | 2580 | WP_302700128.1 | hypothetical protein | - |
| Q3F87_RS15205 (Q3F87_15205) | - | 2973699..2975681 (-) | 1983 | WP_302700129.1 | hypothetical protein | - |
| Q3F87_RS15210 (Q3F87_15210) | - | 2975805..2976278 (-) | 474 | WP_302700130.1 | hypothetical protein | - |
| Q3F87_RS15215 (Q3F87_15215) | - | 2976283..2976585 (-) | 303 | WP_302700131.1 | hypothetical protein | - |
| Q3F87_RS15220 (Q3F87_15220) | - | 2977467..2978435 (-) | 969 | WP_253105210.1 | IS30 family transposase | - |
| Q3F87_RS15225 (Q3F87_15225) | - | 2978537..2979457 (-) | 921 | WP_302700132.1 | hypothetical protein | - |
| Q3F87_RS15230 (Q3F87_15230) | - | 2979700..2980832 (+) | 1133 | WP_257229919.1 | IS3 family transposase | - |
| Q3F87_RS15235 (Q3F87_15235) | - | 2980950..2981366 (-) | 417 | WP_302700134.1 | hypothetical protein | - |
| Q3F87_RS15240 (Q3F87_15240) | - | 2981356..2982060 (-) | 705 | WP_180025251.1 | hypothetical protein | - |
| Q3F87_RS15245 (Q3F87_15245) | - | 2982247..2982822 (-) | 576 | WP_180025252.1 | surface-adhesin E family protein | - |
| Q3F87_RS15250 (Q3F87_15250) | - | 2983468..2983668 (+) | 201 | WP_180002498.1 | hypothetical protein | - |
| Q3F87_RS15255 (Q3F87_15255) | - | 2984106..2984333 (+) | 228 | WP_004781576.1 | hypothetical protein | - |
| Q3F87_RS15265 (Q3F87_15265) | - | 2984695..2985534 (-) | 840 | WP_302700135.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| Q3F87_RS15270 (Q3F87_15270) | - | 2985538..2986845 (-) | 1308 | WP_125279600.1 | FAD-dependent oxidoreductase | - |
| Q3F87_RS15275 (Q3F87_15275) | - | 2987260..2988138 (-) | 879 | WP_180012427.1 | pirin family protein | - |
| Q3F87_RS15280 (Q3F87_15280) | ahpC | 2988383..2988946 (-) | 564 | WP_005232609.1 | alkyl hydroperoxide reductase subunit C | - |
| Q3F87_RS15285 (Q3F87_15285) | - | 2989098..2989742 (-) | 645 | WP_180012429.1 | TetR/AcrR family transcriptional regulator | - |
| Q3F87_RS15290 (Q3F87_15290) | - | 2989881..2990334 (+) | 454 | Protein_2779 | hotdog fold domain-containing protein | - |
| Q3F87_RS15295 (Q3F87_15295) | ssb | 2990404..2990988 (-) | 585 | WP_004781559.1 | single-stranded DNA-binding protein | Machinery gene |
| Q3F87_RS15300 (Q3F87_15300) | - | 2991040..2992404 (-) | 1365 | WP_159123704.1 | MFS transporter | - |
| Q3F87_RS15305 (Q3F87_15305) | - | 2992529..2993587 (-) | 1059 | WP_159123703.1 | RNA-guided endonuclease TnpB family protein | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21179.89 Da Isoelectric Point: 6.4819
>NTDB_id=857904 Q3F87_RS15295 WP_004781559.1 2990404..2990988(-) (ssb) [Acinetobacter variabilis strain TB2-2B]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGGYGSAPQQGGFNNNQGGG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGGYGSAPQQGGFNNNQGGG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF
Nucleotide
Download Length: 585 bp
>NTDB_id=857904 Q3F87_RS15295 WP_004781559.1 2990404..2990988(-) (ssb) [Acinetobacter variabilis strain TB2-2B]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCTCAAGGTGGTTATGGCTCAGCTCCTCAGCAAGGTGGTTTTAACAATAATCAGGGCGGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCGCCTGCAGCTGA
TCTGGACGATGATCTTCCATTTTGA
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ATCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCTCAAGGTGGTTATGGCTCAGCTCCTCAGCAAGGTGGTTTTAACAATAATCAGGGCGGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCGCCTGCAGCTGA
TCTGGACGATGATCTTCCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.521 |
| ssb | Vibrio cholerae strain A1552 |
45 |
100 |
0.464 |
| ssb | Neisseria meningitidis MC58 |
39.796 |
100 |
0.402 |
| ssb | Neisseria gonorrhoeae MS11 |
39.796 |
100 |
0.402 |