Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   I0P84_RS01330 Genome accession   NZ_AP024524
Coordinates   295399..296820 (-) Length   473 a.a.
NCBI ID   WP_414632198.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 290399..301820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS01315 (RYU24_02580) lptG 291460..292530 (+) 1071 WP_005233468.1 LPS export ABC transporter permease LptG -
  I0P84_RS01320 (RYU24_02590) gpmI 292655..294202 (+) 1548 WP_175966319.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I0P84_RS01325 (RYU24_02600) - 294226..295398 (+) 1173 WP_175966318.1 S41 family peptidase -
  I0P84_RS01330 (RYU24_02610) pilR 295399..296820 (-) 1422 WP_414632198.1 sigma-54-dependent transcriptional regulator Regulator
  I0P84_RS01335 (RYU24_02620) pilS 296838..298403 (-) 1566 WP_175966316.1 sensor histidine kinase Regulator
  I0P84_RS01340 (RYU24_02630) - 298431..299066 (-) 636 WP_175966314.1 response regulator transcription factor GacA -
  I0P84_RS01345 (RYU24_02640) - 299284..300330 (+) 1047 WP_175966312.1 serine hydrolase -
  I0P84_RS01350 (RYU24_02650) thrC 300389..301528 (-) 1140 WP_034703411.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53664.85 Da        Isoelectric Point: 6.0060

>NTDB_id=85787 I0P84_RS01330 WP_414632198.1 295399..296820(-) (pilR) [Acinetobacter variabilis strain RYU24]
MVEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKFLTDHQYDACLTDLNLPDGNGLQLLDWINQHSPYLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYYQNNSNDSLEHKLLIGQSLPIQQLRVTLKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDTEIDVDFRVISASHQDLDALVQQGKFRQDLFFRIHVMDLVLPPLRERGQDIL
LLAEHFIQKICQEWEIPAKKLTERSKEFLLEQYYPGNVRELRNIIERAIILSDEDKIDLQHLQTAPLRHMAPVLSETANL
AEPTSSSDQIIIPKKLPEEGLELYLEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEEE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=85787 I0P84_RS01330 WP_414632198.1 295399..296820(-) (pilR) [Acinetobacter variabilis strain RYU24]
ATTGTGGAACAACAACCACTGGTTTTATTGGTGGATGATGAGGAAGATCTATGTACCCTCATGCAAATGTCATTGATGCG
CATGGGAATCCGTACACATATTGCCCATCGTCTGGAAGATGCAAAAAAATTTCTGACAGATCATCAATATGATGCCTGTC
TGACGGATCTAAATCTTCCTGATGGCAATGGTCTGCAATTACTGGACTGGATTAACCAGCATTCCCCTTACCTTCCGGTA
GCTGTTCTAACGGCCTATGGTAATATGGATATTGCTATTGCTGCACTCAAGGCAGGTGCATTTGACTTTGTTAGCAAACC
GATCAATCAAAAGCATCTGGAGCAACTGCTGCAAAAAGCACTAAATAAACCAGTAGACTATTATCAGAATAATTCCAATG
ATTCACTAGAACATAAGCTGCTGATTGGACAATCTCTGCCTATTCAGCAATTGCGTGTCACCTTGAAAAAAATTGCCCGT
TCCCAGGCACCCGTGTTTATTACTGGCGAATCAGGTACCGGGAAAGAAGTTGTCGCCAATCTGGTTCATCGTCTCAGCAA
TCGCAATGAAGGACCTTTTATCGCAATTAACTGCGGTGCAATCCCGACTGAACTGATGGAAAGTGAACTGTTTGGCCATA
AGAAAGGCAGCTTTACTGGCGCGACACAGGACAAGCAGGGACTAATTCAGTCTGCCCATGGAGGTAGTTTGTTCTTAGAT
GAGATTGCTGAATTACCGTTATCTATGCAGGTCAAACTGTTACGTGCTGTTCAGGAAAAACGCATTCGTCCAGTCGGTTC
CGATACTGAAATTGATGTCGATTTCCGTGTCATCAGTGCCAGCCATCAGGATCTCGATGCGCTGGTACAACAAGGCAAAT
TCCGTCAGGACTTGTTCTTCCGTATTCATGTGATGGATCTGGTCTTACCACCCCTGCGTGAGCGCGGCCAGGATATTCTG
CTCCTCGCTGAGCATTTTATTCAAAAGATCTGCCAAGAATGGGAAATTCCTGCGAAAAAGTTGACGGAACGGAGTAAAGA
ATTTTTACTCGAGCAATATTATCCGGGCAATGTACGCGAACTGCGCAACATTATTGAACGCGCAATTATTTTGAGTGATG
AAGACAAGATTGATCTTCAGCATCTGCAAACTGCTCCACTACGTCATATGGCACCTGTCTTATCAGAAACTGCCAATCTG
GCAGAGCCGACTTCATCTTCGGATCAGATCATTATTCCCAAGAAACTCCCCGAAGAAGGTCTGGAACTGTATTTAGAAAA
GATTGAAAAAGAAATTCTGTTGAATGCTTTGAATCTGACCCATTGGAACCGTACATTGGCCGCGAAGAAACTGGGGATGT
CATTTCGGTCTTTACGTTACCGTCTGAAAAAATTCGGACTGGATACCGAAGAAGAGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.884

100

0.772
  pilR Pseudomonas aeruginosa PAK

49.024

97.463

0.478

Multiple sequence alignment