Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   I0P84_RS01335 Genome accession   NZ_AP024524
Coordinates   296838..298403 (-) Length   521 a.a.
NCBI ID   WP_175966316.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain RYU24     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 291838..303403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0P84_RS01320 (RYU24_02590) gpmI 292655..294202 (+) 1548 WP_175966319.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  I0P84_RS01325 (RYU24_02600) - 294226..295398 (+) 1173 WP_175966318.1 S41 family peptidase -
  I0P84_RS01330 (RYU24_02610) pilR 295399..296820 (-) 1422 WP_414632198.1 sigma-54-dependent transcriptional regulator Regulator
  I0P84_RS01335 (RYU24_02620) pilS 296838..298403 (-) 1566 WP_175966316.1 sensor histidine kinase Regulator
  I0P84_RS01340 (RYU24_02630) - 298431..299066 (-) 636 WP_175966314.1 response regulator transcription factor GacA -
  I0P84_RS01345 (RYU24_02640) - 299284..300330 (+) 1047 WP_175966312.1 serine hydrolase -
  I0P84_RS01350 (RYU24_02650) thrC 300389..301528 (-) 1140 WP_034703411.1 threonine synthase -
  I0P84_RS01355 (RYU24_02660) - 301586..302890 (-) 1305 WP_005233480.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59659.71 Da        Isoelectric Point: 6.3704

>NTDB_id=85788 I0P84_RS01335 WP_175966316.1 296838..298403(-) (pilS) [Acinetobacter variabilis strain RYU24]
MAQTSSYSELNQYHLGLWYSAYRLIISTGLLLIFLLTYPDMTADYQYPKLYHYALMIGVAVNTVQLFTLRWVKRLIQPQF
ILIFASDVFFLSLLTLASQGPNVHLGLIFVITIFSASLLLDAKKALIITLIAVISIIYQHFIGSIFAFSSLTNIGNSALL
AFLFFVVYGSGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPMYAHER
FSLYQSQNDLFELIRFENLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEPEQQQVLHQMISRQATRIDRIIQDTLNMVKNKETHPVVIQLNEFIPLFIQEDLADVAD
QIQFNIDVPLAIQFDEAQLRQILINLIRNAIRHNSPDSSHIQLNIHPYEHKVWIDVRDFGSGVATHDQELLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYISQEQGACFRISCQRVTA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=85788 I0P84_RS01335 WP_175966316.1 296838..298403(-) (pilS) [Acinetobacter variabilis strain RYU24]
ATGGCGCAAACATCCAGTTATTCTGAACTGAATCAATATCATCTGGGCCTATGGTATAGCGCCTACCGCCTGATTATCAG
CACGGGTCTGTTGCTGATTTTCCTGCTGACTTATCCCGATATGACTGCGGATTATCAGTATCCTAAACTCTATCACTATG
CCTTAATGATTGGCGTCGCCGTCAATACTGTGCAGCTGTTTACACTAAGATGGGTAAAGCGCCTGATTCAGCCACAGTTC
ATTCTGATTTTTGCCAGCGATGTCTTTTTTCTCAGTTTATTGACCTTGGCCAGTCAGGGCCCAAATGTCCATCTCGGACT
GATTTTTGTTATTACCATTTTTTCAGCTTCATTATTACTGGATGCCAAGAAAGCCCTGATCATTACTCTGATTGCGGTGA
TTAGTATTATCTACCAGCATTTTATCGGCAGTATTTTTGCTTTTTCTTCCCTTACCAATATCGGAAACAGTGCCCTGCTG
GCCTTTCTGTTTTTTGTCGTCTATGGCTCGGGACAAATTGCGGTACGGCGCTTTCAAATTCTGGAAAACCTGAATTTTTC
TCAATCGCTAGAACTATATCGCTTACAGAATATTAACCGCTATATTCTAGAACAGATTGAAACTGGTTATCTGGTCTTAG
ATGAGAATTACCATGTGGTGCTCAGTAATCCGGCTGCCTGTCATCTGCTCGGCATTGAGCCAATGTATGCCCATGAAAGG
TTTTCGTTATACCAATCTCAAAATGACTTATTTGAACTGATCCGTTTTGAAAATCTGGAAAATGGCGAGCGGTTTCAATT
TGAATCCCAACAGAGTCGTTATAATATTCACGTGCAGGTACAAAAGCTGATTGTGCCGCACCAGACTCTGACTCTGCTCG
TGCTGCAAGATGCCCGCAAACTTAATCAGCAGGTGCAACAGTTAAAGCTTGCTGCTTTAGGCCAGCTTTCCGCCAGTATT
GCCCATGAAATTCGCAATCCTCTGGCTGCCATTGTACAGGCCAATGATCTTTATCTCGATTCTGAACCTGAACAGCAACA
GGTCCTGCATCAGATGATCAGCCGACAGGCTACCCGTATTGACCGGATTATTCAGGACACCCTGAATATGGTGAAGAATA
AAGAAACCCATCCGGTCGTAATTCAGCTGAATGAATTTATACCACTATTTATTCAGGAAGATTTAGCAGATGTGGCCGAC
CAGATTCAATTTAATATTGATGTACCACTGGCTATTCAGTTCGATGAAGCCCAGTTACGTCAGATTCTAATTAACCTGAT
TCGTAATGCTATCCGTCACAATTCTCCAGATTCATCTCATATTCAATTGAATATTCACCCATATGAACATAAGGTATGGA
TAGATGTTCGGGATTTTGGCTCTGGTGTTGCCACCCATGATCAGGAATTATTATTTAAACCTTTTTTCAGCACGTCTATC
CATGGAACGGGACTCGGACTATATTTATCACACAGTTTTTGTGAAGCCAATCAGGCACAACTCAACTACATTTCACAAGA
ACAGGGCGCATGCTTTCGGATTAGTTGTCAACGTGTGACAGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.02

96.929

0.562

Multiple sequence alignment