Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WAZ52_RS12940 Genome accession   NZ_CP147038
Coordinates   2554507..2555043 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 21F61     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2549507..2560043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAZ52_RS12920 (WAZ52_12920) soxR 2551236..2551700 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  WAZ52_RS12925 (WAZ52_12925) soxS 2551786..2552109 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  WAZ52_RS12930 (WAZ52_12930) pdeC 2552112..2553698 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  WAZ52_RS12935 (WAZ52_12935) yjcB 2554127..2554408 (+) 282 WP_001295689.1 YjcB family protein -
  WAZ52_RS12940 (WAZ52_12940) ssb 2554507..2555043 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WAZ52_RS12945 (WAZ52_12945) uvrA 2555298..2558120 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  WAZ52_RS12950 (WAZ52_12950) yjbR 2558155..2558511 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  WAZ52_RS12955 (WAZ52_12955) yjbQ 2558515..2558931 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  WAZ52_RS12960 (WAZ52_12960) aphA 2559042..2559755 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=857740 WAZ52_RS12940 WP_000168305.1 2554507..2555043(-) (ssb) [Escherichia coli strain 21F61]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=857740 WAZ52_RS12940 WP_000168305.1 2554507..2555043(-) (ssb) [Escherichia coli strain 21F61]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489