Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q2E61_RS02640 Genome accession   NZ_CP130317
Coordinates   612862..613404 (+) Length   180 a.a.
NCBI ID   WP_067151105.1    Uniprot ID   A0A143HJG4
Organism   Microbulbifer thermotolerans strain HB226069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 607862..618404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q2E61_RS02630 (Q2E61_02630) - 610043..611449 (+) 1407 WP_067151100.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  Q2E61_RS02635 (Q2E61_02635) - 611588..612757 (+) 1170 WP_067151103.1 MFS transporter -
  Q2E61_RS02640 (Q2E61_02640) ssb 612862..613404 (+) 543 WP_067151105.1 single-stranded DNA-binding protein Machinery gene
  Q2E61_RS02645 (Q2E61_02645) - 613420..614274 (+) 855 WP_067151108.1 sugar nucleotide-binding protein -
  Q2E61_RS02650 (Q2E61_02650) fabB 614351..615577 (-) 1227 WP_067151111.1 beta-ketoacyl-ACP synthase I -
  Q2E61_RS02655 (Q2E61_02655) fabA 615660..616184 (-) 525 WP_067157329.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  Q2E61_RS02660 (Q2E61_02660) galU 616465..617322 (+) 858 WP_067151114.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19594.41 Da        Isoelectric Point: 4.9658

>NTDB_id=857675 Q2E61_RS02640 WP_067151105.1 612862..613404(+) (ssb) [Microbulbifer thermotolerans strain HB226069]
MASRGINKVILIGNLGSDPETRYMPSGGAVTNVSLATSESWKDKQTGQPQERTEWHRVVFFNRLAEIAGEYLRKGSKVYV
EGRLQTRKWQDQNGQDRYTTEIVANEMQMLDSRGEQGGFNQGMGGGQGGYQQQGGGQADPYAQGRSAPSPMAPSTNPSGQ
QPNQAPSGGFDNSFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=857675 Q2E61_RS02640 WP_067151105.1 612862..613404(+) (ssb) [Microbulbifer thermotolerans strain HB226069]
ATGGCCAGCAGGGGTATCAACAAAGTTATTCTGATCGGTAATCTGGGGTCAGACCCGGAAACCCGCTATATGCCCAGCGG
CGGCGCCGTGACCAATGTCAGCTTGGCGACGTCAGAGTCCTGGAAAGACAAGCAGACCGGGCAGCCCCAGGAGCGCACAG
AGTGGCATCGGGTGGTCTTTTTTAACCGCCTGGCCGAGATCGCCGGTGAGTATCTGCGCAAGGGCTCCAAAGTCTATGTA
GAGGGGCGCCTGCAGACCCGCAAGTGGCAGGATCAGAACGGCCAGGACCGCTATACCACGGAAATTGTGGCCAACGAGAT
GCAGATGCTCGACAGCCGCGGTGAGCAGGGCGGTTTTAATCAGGGCATGGGCGGCGGCCAGGGCGGCTATCAGCAGCAGG
GCGGCGGTCAGGCTGACCCCTATGCCCAAGGCCGATCAGCGCCCTCGCCGATGGCGCCTTCCACCAATCCGTCGGGACAG
CAGCCGAACCAGGCGCCCTCTGGTGGTTTCGACAACAGTTTCGATGACGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HJG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.989

100

0.589
  ssb Glaesserella parasuis strain SC1401

58.333

100

0.583
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.489
  ssb Neisseria meningitidis MC58

47.778

100

0.478