Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPK55_RS27565 Genome accession   NZ_CP130284
Coordinates   5423583..5424095 (-) Length   170 a.a.
NCBI ID   WP_000981966.1    Uniprot ID   A0A0A3WKS9
Organism   Bacillus cereus strain Z4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5418583..5429095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK55_RS27545 (QPK55_27535) rplI 5419794..5420240 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  QPK55_RS27550 (QPK55_27540) - 5420237..5422210 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  QPK55_RS27555 (QPK55_27545) - 5422289..5423224 (-) 936 WP_000814840.1 YybS family protein -
  QPK55_RS27560 (QPK55_27550) rpsR 5423304..5423537 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  QPK55_RS27565 (QPK55_27555) ssbA 5423583..5424095 (-) 513 WP_000981966.1 single-stranded DNA-binding protein Machinery gene
  QPK55_RS27570 (QPK55_27560) rpsF 5424122..5424412 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  QPK55_RS27575 (QPK55_27565) ychF 5424604..5425704 (-) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  QPK55_RS27580 (QPK55_27570) - 5425820..5426017 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  QPK55_RS27585 (QPK55_27575) - 5426038..5426919 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  QPK55_RS27590 (QPK55_27580) yyaC 5427179..5427775 (+) 597 WP_001020714.1 spore protease YyaC -
  QPK55_RS27595 (QPK55_27585) spo0J 5427796..5428647 (-) 852 WP_001051831.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18494.29 Da        Isoelectric Point: 4.9327

>NTDB_id=857667 QPK55_RS27565 WP_000981966.1 5423583..5424095(-) (ssbA) [Bacillus cereus strain Z4]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=857667 QPK55_RS27565 WP_000981966.1 5423583..5424095(-) (ssbA) [Bacillus cereus strain Z4]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3WKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394