Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STYK_RS08590 Genome accession   NZ_AP024523
Coordinates   1706675..1708642 (-) Length   655 a.a.
NCBI ID   WP_261804898.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701675..1713642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08580 (STYK_16450) - 1702855..1704300 (-) 1446 WP_261804896.1 LCP family protein -
  STYK_RS08585 (STYK_16460) amiA3 1704490..1706448 (-) 1959 WP_261804897.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS08590 (STYK_16470) amiA 1706675..1708642 (-) 1968 WP_261804898.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS08595 (STYK_16480) - 1708810..1710420 (-) 1611 WP_261804899.1 glycoside hydrolase family 13 protein -
  STYK_RS08600 (STYK_16490) - 1710573..1712057 (+) 1485 WP_070528737.1 DUF1846 domain-containing protein -
  STYK_RS08605 (STYK_16500) - 1712152..1712634 (+) 483 WP_000032547.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72665.38 Da        Isoelectric Point: 5.4098

>NTDB_id=85764 STYK_RS08590 WP_261804898.1 1706675..1708642(-) (amiA) [Streptococcus toyakuensis strain TP1632]
MKSKKWLLGAGVTLSTAILLTACGKSEKNADAPKTFSYVYAVDPSSLDYSVTSKSSTSDVIGNVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLVEKSIKGLEAYVSGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNATGKDYGAPTPSSILYNGPYFLKSLISKSVIEYEKNPNYWDK
DNVKIDNVKLTFYDGSDQESLIRSFTQGAYTTARLFPASSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DESQKTSTKEALLNKNFRQAINFAFNRHAYTAQLNGEEGADKIIRNSLVPDNYVQVAGKTFGQLAQDELLKYGEQWKDVT
LTDGKDTIYNPTKAKSAFEKAKSELQAKGVTFPIHLDVPVEQTDVVAVQQTNSLKQSIEETLGTENVIIDVLQMTDNEKE
SITSQAKVPTQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVVAKVGLDEYKKLLDDAASETSNLD
KRYKKYAKAQAWVTDSSLLIPVASSGGSPMVSRTVPFTKAYSQVGIKGDPFIFKGMELQNDIVTTKEYDAAFKKWQKEKL
ESNAQYQKDLEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=85764 STYK_RS08590 WP_261804898.1 1706675..1708642(-) (amiA) [Streptococcus toyakuensis strain TP1632]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGAGTGACCTTGAGTACAGCCATTCTTTTAACAGCTTGTGGGAAAAGTGA
AAAGAATGCAGATGCTCCCAAAACATTCTCTTATGTTTATGCTGTTGATCCATCATCCTTGGATTATAGCGTTACAAGTA
AAAGTTCAACTTCTGACGTAATAGGTAATGTCGTCGACGGTCTTTTAGAGAATGATAAATATGGGAATCTCATTCCTTCT
CTAGCAGAGGATTGGTCAGTTTCTAAAGATGGCTTGACTTATACTTACAAACTACGTAAAGGTGTGAAGTGGTATACTTC
AGAAGGAGAAGAGTATGCGGAAGTTAAAGCTCAGGATTTTGTCACCGGATTAAAGCATGCAGCAGACGGAAAATCCGATG
GTCTTTCTTTGGTTGAGAAATCCATCAAAGGATTGGAGGCTTATGTTAGTGGTGAGACAAACGACTTCTCAACTGTAGGT
GTGAAGGCTCTTGATGATTATACGGTAGAATATACCCTTAATAAACCGGAAAGTTTTTGGAACTCTAAAGTAACCACAGC
AACCATGCTTCCTGTAAATGAAGAATTTTTGAATGCAACAGGCAAGGATTACGGAGCGCCAACTCCATCAAGTATTCTTT
ACAATGGCCCATATTTTTTGAAATCTTTGATTTCTAAATCTGTGATTGAATATGAAAAAAATCCTAACTATTGGGATAAG
GACAATGTCAAAATTGATAATGTTAAATTGACATTCTATGATGGTTCAGATCAAGAATCCTTAATTCGTAGCTTTACACA
AGGTGCCTATACCACTGCACGTCTTTTTCCAGCAAGCTCAAACTTTGAGTCAACTAAGAAAGAGTACGGAGATAAGATTG
TCTATAGTCCACAAGAGGCAACAAGCTACTACCTCACTGTGAACGTAAACCGCCAGTCTTACAATAAAACAGCTAAAACA
GATGAGTCACAAAAAACATCAACAAAAGAAGCTCTTCTCAATAAGAACTTCCGTCAAGCAATTAATTTTGCCTTCAATCG
CCACGCCTATACAGCTCAATTAAACGGTGAAGAGGGTGCGGATAAGATTATTCGTAATAGTCTAGTGCCAGATAATTACG
TTCAAGTAGCTGGGAAGACCTTCGGACAGTTGGCTCAGGATGAACTACTGAAATATGGAGAACAGTGGAAAGATGTGACT
CTCACAGATGGTAAGGATACAATTTACAATCCAACAAAGGCCAAGTCTGCATTTGAAAAAGCGAAGTCAGAATTGCAAGC
TAAGGGAGTGACTTTCCCGATTCATCTAGATGTGCCAGTAGAACAGACAGATGTAGTTGCGGTGCAACAAACCAATTCGC
TAAAACAATCAATTGAAGAAACGCTTGGAACGGAGAATGTGATTATAGATGTTCTTCAAATGACAGATAATGAGAAGGAA
AGTATTACTTCTCAAGCTAAAGTTCCAACCCAAAAAGATTATGATTTGAACGGAACAGGTTGGGGACCAGATTACCAAGA
TCCAGCAACCTATCTCAATATTTTAGATGCTAAGAAGGGTTCTGCCTTGAAACATCTAGGTATAACAAAGGGCAAGGATC
CTGAAGTTGTGGCAAAAGTTGGCTTGGATGAATACAAGAAGCTCTTGGATGATGCGGCTTCTGAGACAAGTAATCTTGAT
AAACGATACAAAAAGTATGCTAAAGCACAGGCTTGGGTTACTGATAGTTCACTTCTTATTCCAGTTGCTTCTTCAGGGGG
CTCTCCTATGGTTAGTCGTACTGTTCCATTTACCAAAGCTTATTCACAGGTCGGTATTAAGGGGGATCCATTTATTTTTA
AAGGAATGGAACTTCAAAATGATATTGTGACAACTAAAGAGTATGATGCGGCCTTCAAAAAGTGGCAAAAGGAAAAACTG
GAATCGAATGCTCAGTATCAAAAGGATTTAGAAAAGCACATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.799

100

0.54
  amiA3 Streptococcus thermophilus LMD-9

53.263

100

0.536
  amiA3 Streptococcus thermophilus LMG 18311

52.807

100

0.531

Multiple sequence alignment