Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STYK_RS08585 Genome accession   NZ_AP024523
Coordinates   1704490..1706448 (-) Length   652 a.a.
NCBI ID   WP_261804897.1    Uniprot ID   -
Organism   Streptococcus toyakuensis strain TP1632     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1699490..1711448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STYK_RS08570 (STYK_16440) glf 1701545..1702648 (-) 1104 WP_261020303.1 UDP-galactopyranose mutase -
  STYK_RS08580 (STYK_16450) - 1702855..1704300 (-) 1446 WP_261804896.1 LCP family protein -
  STYK_RS08585 (STYK_16460) amiA3 1704490..1706448 (-) 1959 WP_261804897.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS08590 (STYK_16470) amiA 1706675..1708642 (-) 1968 WP_261804898.1 peptide ABC transporter substrate-binding protein Regulator
  STYK_RS08595 (STYK_16480) - 1708810..1710420 (-) 1611 WP_261804899.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72505.55 Da        Isoelectric Point: 4.9243

>NTDB_id=85763 STYK_RS08585 WP_261804897.1 1704490..1706448(-) (amiA3) [Streptococcus toyakuensis strain TP1632]
MTTKKRILSAGLTVAAALLLTACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDQTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSGINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESVLGADNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNTEDGFYLKIFGLDAQEDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKTKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=85763 STYK_RS08585 WP_261804897.1 1704490..1706448(-) (amiA3) [Streptococcus toyakuensis strain TP1632]
ATGACTACAAAAAAGCGTATCCTTAGTGCAGGTCTGACTGTTGCAGCTGCCTTGCTGTTAACTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAACCCAACTACATTTAACTACTTATTAGACTACTACGCTGATA
ATACAGCTATTATTACTAACCTAGTTGATGGTTTGCTTGAAAATGACAACCACGGAAACCTAGTTCCATCTTTGGCAGAG
GACTGGTCTGTTTCAAGCGACGGTCTGACTTATACCTATAAACTGAGAAAAGATGCCAAATGGTTTACGGCTGACGGTGA
AGAGTATGCCCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAATACGCAGTGGATAATAAATCCCAGGCCATTGACT
TGATTCAAAACTCAATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTGAAGGCC
ATTGACGACCAGACTGTTGAGTATACTTTGGCGCGCCCAGAACCTTACTGGAACTCAAAAACAACCAACAGTATTCTTTT
CCCAGTGAATGAAGAGTTTCTAAACTCAAAAGGGAAAGATTTTGGTACCCTATCTCCAGATAGCATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATCGAGTATGTGAAAAATCCGCATTATTATGATCATGACAAAGTA
TCGATTGAACACGTAAAATTGGCCTATTTTGATGGTTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCTTA
TTCAATCGCAGGTGTTTATCCAAATAGTTCTAACTTTGCTAAGACCAAGGAGAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTATTTCAATTTTAACGTCAACCGTAAGGCCTACAATCACACTGCTAAGACAACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTTTTGAACAAGAACTTCCGCCAAGCGGTGAACTTTGCCTTGGACCGCACAGCCTA
TTCTGCTCAGTCAAATGGGGAAGAAGCGGCTAGCAAGACCCTTCGTAACACCCTAGTACCTCCTACATTTGTCCAAGTTG
GAGACAAGACTTTTGGAGAAGTAGTCGCTTCTAAATTGGTCAACTATGGCACAGAATGGTCAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTATTTTAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACTTTCCCTATTCACTTGGATGTAGCTGTTGATCAAACAAGTAAAAATGCTGTGACAGGCATGAACTCAGTTAAGCAGA
CCCTTGAGTCAGTTTTAGGTGCTGATAACATTGTCATTGATGTTCAGCAACTTTCAACAGATGATTTTAATAACGTAGCC
TTCTTAGCACCAACGCCAGCTGATCGTGACTATGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCATCAAC
TTACCTCAATCCTTTCAATACAGAGGATGGATTCTATCTCAAGATTTTTGGTCTAGATGCTCAAGAAGATAAAGCTAAGA
TTGCTAGCTTGGGACTTGATACTTACACCAAGATGCTCAAAGATGCAGATAGCGAAAATAAAGATGTAGCCAAACGCTAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCAATGTCAAGTGGTGGTACAGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGCTATTCACTGGTCGGCATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACCAAACAGTATGAAGAAGCTAAGACTAAATGGGAGCAAGAAAGTAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.685

100

0.511
  amiA Streptococcus salivarius strain HSISS4

50.305

100

0.506
  amiA3 Streptococcus thermophilus LMG 18311

50.228

100

0.506

Multiple sequence alignment