Detailed information NTG0857417

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q2F48_RS02225
• Genome accession: NZ_CP130164
• Coordinates: 451172..452047 (-)
• Length: 291 a.a.
• NCBI ID: WP_119197036.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain WZDHY22015
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 446172..457047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q2F48_RS02200 (Q2F48_02200)	-	447919..449103 (+)	1185	WP_216987869.1	tetratricopeptide repeat protein	-
Q2F48_RS02205 (Q2F48_02205)	mutT	449112..449516 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
Q2F48_RS02210 (Q2F48_02210)	yacG	449574..449768 (-)	195	WP_039040499.1	DNA gyrase inhibitor YacG	-
Q2F48_RS02215 (Q2F48_02215)	zapD	449779..450501 (-)	723	WP_279961679.1	cell division protein ZapD	-
Q2F48_RS02220 (Q2F48_02220)	coaE	450539..451153 (-)	615	WP_109111851.1	dephospho-CoA kinase	-
Q2F48_RS02225 (Q2F48_02225)	pilD	451172..452047 (-)	876	WP_119197036.1	A24 family peptidase	Machinery gene
Q2F48_RS02230 (Q2F48_02230)	pilC	452125..453366 (-)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
Q2F48_RS02235 (Q2F48_02235)	pilB	453494..455200 (-)	1707	WP_041213997.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
Q2F48_RS02240 (Q2F48_02240)	-	455208..455582 (-)	375	WP_103261553.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
Q2F48_RS02245 (Q2F48_02245)	nadC	455893..456756 (-)	864	WP_052814467.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32051.18 Da
• Isoelectric Point: 6.8280

>NTDB_id=857417 Q2F48_RS02225 WP_119197036.1 451172..452047(-) (pilD) [Aeromonas caviae strain WZDHY22015]
MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEETPPATGRYNLMVPRSRCPHCDH
PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLAGGFVPLADAVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

• Length: 876 bp

>NTDB_id=857417 Q2F48_RS02225 WP_119197036.1 451172..452047(-) (pilD) [Aeromonas caviae strain WZDHY22015]
ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG
CAGCTTCCTGAACGTGGTGATCCATCGCCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG
GTGACGGTGAAGAGACTCCTCCTGCAACCGGACGATACAACCTCATGGTACCTCGCTCCCGCTGCCCCCACTGCGACCAC
CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT
TTCGGCTCGCTATCCCCTGGTTGAGCTGCTAACCGCCCTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCCGGCTGGG
GCACCCTTGCCGCTCTGTTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT
CAGCTCACCCTGCCCCTGCTCTGGGGTGGCCTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGCGGTGGT
CGGCGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT
ACGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTGGGATGGCAAGCCTTGCCCATCGTGCTGCTGCTCTCTTCG
CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCCTA
TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (140-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	52.33	95.876	0.502
pilD	Acinetobacter nosocomialis M2	52.33	95.876	0.502
pilD	Neisseria gonorrhoeae MS11	51.724	89.691	0.464