Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QY917_RS13420 Genome accession   NZ_CP129980
Coordinates   2857054..2857596 (+) Length   180 a.a.
NCBI ID   WP_123675484.1    Uniprot ID   A0AAX1WWY6
Organism   Diaphorobacter sp. C33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2852054..2862596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY917_RS13410 (QY917_13410) - 2852820..2855441 (+) 2622 WP_148060995.1 S-layer family protein -
  QY917_RS13415 (QY917_13415) - 2855663..2856919 (+) 1257 WP_302077305.1 MFS transporter -
  QY917_RS13420 (QY917_13420) ssb 2857054..2857596 (+) 543 WP_123675484.1 single-stranded DNA-binding protein Machinery gene
  QY917_RS13425 (QY917_13425) - 2857704..2859365 (-) 1662 WP_088888060.1 L-lactate permease -
  QY917_RS13430 (QY917_13430) mnmA 2859604..2860716 (-) 1113 WP_123675483.1 tRNA 2-thiouridine(34) synthase MnmA -
  QY917_RS13435 (QY917_13435) - 2860866..2861840 (+) 975 WP_088888058.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19342.32 Da        Isoelectric Point: 5.9554

>NTDB_id=856829 QY917_RS13420 WP_123675484.1 2857054..2857596(+) (ssb) [Diaphorobacter sp. C33]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVRIATTDRWRDKNTGENKEATEWHSVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGQERYTTEIRADTMQMLGSRQGMGGGQGGGYDDSGYGDNGGGGGGYEAPRRAAPAPRPAPPAARPAPAP
VAQPPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=856829 QY917_RS13420 WP_123675484.1 2857054..2857596(+) (ssb) [Diaphorobacter sp. C33]
ATGGCATCCGTGAACAAAGTCATCATCGTCGGCAACCTGGGGCGCGACCCCGAGATGCGCACCTTCCCCAGCGGCGACCA
GGTCGCCAACGTGCGCATCGCCACGACGGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCCACCGAATGGC
ACAGCGTGGTCTTCAACGGCCGCCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTACGTGGAAGGC
AGCCTGCGCACGCGCAAATGGACCGACCAGAGCGGCCAGGAGCGCTACACCACCGAAATCCGCGCCGACACCATGCAGAT
GCTGGGCAGCCGCCAGGGCATGGGCGGCGGCCAGGGCGGCGGCTATGACGACAGCGGCTACGGCGACAACGGCGGCGGTG
GTGGCGGCTACGAGGCCCCGCGCCGCGCCGCACCCGCGCCGCGCCCCGCCCCCCCCGCGGCCCGCCCCGCCCCCGCGCCC
GTGGCACAGCCGCCGCGCGCTGCATCGGGCTTTGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.604

100

0.561
  ssb Vibrio cholerae strain A1552

50.538

100

0.522
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.456
  ssb Neisseria meningitidis MC58

44.199

100

0.444