Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V9Z38_RS23290 Genome accession   NZ_CP146675
Coordinates   4835120..4835656 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MS 69-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4830120..4840656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z38_RS23270 (V9Z38_23270) ghxP 4831678..4832610 (-) 933 Protein_4563 guanine/hypoxanthine transporter GhxP -
  V9Z38_RS23275 (V9Z38_23275) - 4832599..4832721 (+) 123 Protein_4564 AraC family transcriptional regulator -
  V9Z38_RS23280 (V9Z38_23280) pdeC 4832724..4834310 (-) 1587 WP_000019577.1 c-di-GMP phosphodiesterase PdeC -
  V9Z38_RS23285 (V9Z38_23285) yjcB 4834740..4835021 (+) 282 WP_001295689.1 YjcB family protein -
  V9Z38_RS23290 (V9Z38_23290) ssb 4835120..4835656 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V9Z38_RS23295 (V9Z38_23295) uvrA 4835911..4838733 (+) 2823 WP_000357730.1 excinuclease ABC subunit UvrA Machinery gene
  V9Z38_RS23300 (V9Z38_23300) yjbR 4838768..4839124 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  V9Z38_RS23305 (V9Z38_23305) yjbQ 4839128..4839544 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V9Z38_RS23310 (V9Z38_23310) aphA 4839655..4840368 (-) 714 WP_001226926.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=856827 V9Z38_RS23290 WP_000168305.1 4835120..4835656(-) (ssb) [Escherichia coli strain MS 69-1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=856827 V9Z38_RS23290 WP_000168305.1 4835120..4835656(-) (ssb) [Escherichia coli strain MS 69-1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489