Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | Q0M94_RS14485 | Genome accession | NZ_CP129906 |
| Coordinates | 2875335..2875691 (+) | Length | 118 a.a. |
| NCBI ID | WP_407539350.1 | Uniprot ID | - |
| Organism | Deinococcus radiomollis strain PO-04-20-132 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2854396..2879378 | 2875335..2875691 | within | 0 |
Gene organization within MGE regions
Location: 2854396..2879378
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q0M94_RS14385 (Q0M94_14335) | - | 2854396..2854752 (+) | 357 | WP_407539330.1 | ComF family protein | - |
| Q0M94_RS14390 (Q0M94_14340) | - | 2854749..2856446 (+) | 1698 | WP_407539331.1 | hypothetical protein | - |
| Q0M94_RS14395 (Q0M94_14345) | - | 2856534..2857232 (+) | 699 | WP_407539332.1 | LexA family protein | - |
| Q0M94_RS14400 (Q0M94_14350) | - | 2857234..2857527 (+) | 294 | WP_407539333.1 | hypothetical protein | - |
| Q0M94_RS14405 (Q0M94_14355) | - | 2858313..2858567 (-) | 255 | WP_407539334.1 | hypothetical protein | - |
| Q0M94_RS14410 (Q0M94_14360) | - | 2858644..2859423 (-) | 780 | WP_407539335.1 | IS982 family transposase | - |
| Q0M94_RS14415 (Q0M94_14365) | - | 2859891..2860235 (-) | 345 | WP_407539336.1 | hypothetical protein | - |
| Q0M94_RS14420 (Q0M94_14370) | - | 2860457..2861494 (-) | 1038 | WP_407539337.1 | ImmA/IrrE family metallo-endopeptidase | - |
| Q0M94_RS14425 (Q0M94_14375) | - | 2861512..2861796 (-) | 285 | WP_407539338.1 | hypothetical protein | - |
| Q0M94_RS14430 (Q0M94_14380) | - | 2862121..2862594 (+) | 474 | WP_407539339.1 | hypothetical protein | - |
| Q0M94_RS14435 (Q0M94_14385) | - | 2862597..2863292 (+) | 696 | WP_407539340.1 | hypothetical protein | - |
| Q0M94_RS14440 (Q0M94_14390) | - | 2863289..2863510 (+) | 222 | WP_407539341.1 | hypothetical protein | - |
| Q0M94_RS14445 (Q0M94_14395) | - | 2863863..2864309 (-) | 447 | WP_407539342.1 | DUF3761 domain-containing protein | - |
| Q0M94_RS14450 (Q0M94_14400) | - | 2864593..2865156 (+) | 564 | WP_407539343.1 | hypothetical protein | - |
| Q0M94_RS14455 (Q0M94_14405) | - | 2865153..2868032 (-) | 2880 | WP_407539344.1 | N-6 DNA methylase | - |
| Q0M94_RS14460 (Q0M94_14410) | - | 2868440..2869960 (-) | 1521 | WP_407539345.1 | TniQ family protein | - |
| Q0M94_RS14465 (Q0M94_14415) | - | 2869944..2870975 (-) | 1032 | WP_407539346.1 | TniB family NTP-binding protein | - |
| Q0M94_RS14470 (Q0M94_14420) | - | 2871114..2872559 (-) | 1446 | WP_407539347.1 | hypothetical protein | - |
| Q0M94_RS14475 (Q0M94_14425) | - | 2872619..2874568 (-) | 1950 | WP_407539348.1 | Mu transposase C-terminal domain-containing protein | - |
| Q0M94_RS14480 (Q0M94_14430) | - | 2874565..2875209 (-) | 645 | WP_407539349.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| Q0M94_RS14485 (Q0M94_14435) | comF | 2875335..2875691 (+) | 357 | WP_407539350.1 | ComF family protein | Machinery gene |
| Q0M94_RS14490 (Q0M94_14440) | - | 2875744..2878662 (+) | 2919 | WP_407539351.1 | insulinase family protein | - |
| Q0M94_RS14495 (Q0M94_14445) | - | 2878728..2879378 (-) | 651 | WP_407539352.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 12607.48 Da Isoelectric Point: 10.4116
>NTDB_id=856359 Q0M94_RS14485 WP_407539350.1 2875335..2875691(+) (comF) [Deinococcus radiomollis strain PO-04-20-132]
MATAGWGVQAVTAVPLHPVRMRERGFNQAELLGRQVATGLGIPYLLALSRSRATGNQAKRHAKDRLNALDDAFTASANLP
ETLLLVDDVMTTGSTLLSCASALREAGVRQVYFATVAR
MATAGWGVQAVTAVPLHPVRMRERGFNQAELLGRQVATGLGIPYLLALSRSRATGNQAKRHAKDRLNALDDAFTASANLP
ETLLLVDDVMTTGSTLLSCASALREAGVRQVYFATVAR
Nucleotide
Download Length: 357 bp
>NTDB_id=856359 Q0M94_RS14485 WP_407539350.1 2875335..2875691(+) (comF) [Deinococcus radiomollis strain PO-04-20-132]
GTGGCAACAGCGGGCTGGGGCGTACAGGCGGTGACGGCCGTGCCGCTGCACCCGGTCAGAATGCGCGAACGCGGCTTCAA
TCAGGCCGAACTGCTCGGCAGACAGGTGGCGACGGGGCTGGGTATTCCGTATCTGCTCGCCCTGAGCCGCAGCCGCGCGA
CCGGCAACCAGGCCAAGCGTCATGCGAAGGACCGGCTGAACGCCCTCGATGACGCCTTCACTGCGTCGGCGAACCTGCCG
GAAACCCTGCTTCTCGTTGACGATGTGATGACCACCGGCTCGACATTGCTCTCCTGCGCCAGTGCGCTGCGCGAGGCTGG
GGTGCGGCAGGTCTACTTCGCTACCGTCGCCCGCTGA
GTGGCAACAGCGGGCTGGGGCGTACAGGCGGTGACGGCCGTGCCGCTGCACCCGGTCAGAATGCGCGAACGCGGCTTCAA
TCAGGCCGAACTGCTCGGCAGACAGGTGGCGACGGGGCTGGGTATTCCGTATCTGCTCGCCCTGAGCCGCAGCCGCGCGA
CCGGCAACCAGGCCAAGCGTCATGCGAAGGACCGGCTGAACGCCCTCGATGACGCCTTCACTGCGTCGGCGAACCTGCCG
GAAACCCTGCTTCTCGTTGACGATGTGATGACCACCGGCTCGACATTGCTCTCCTGCGCCAGTGCGCTGCGCGAGGCTGG
GGTGCGGCAGGTCTACTTCGCTACCGTCGCCCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
54.31 |
98.305 |
0.534 |
| comF | Haemophilus influenzae 86-028NP |
40 |
97.458 |
0.39 |
| comF | Haemophilus influenzae Rd KW20 |
39.13 |
97.458 |
0.381 |
| comFC | Legionella pneumophila strain ERS1305867 |
39.091 |
93.22 |
0.364 |
| comFC | Legionella pneumophila str. Paris |
39.091 |
93.22 |
0.364 |