Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QY062_RS01075 Genome accession   NZ_CP129891
Coordinates   216868..217365 (+) Length   165 a.a.
NCBI ID   WP_013059767.1    Uniprot ID   -
Organism   Priestia megaterium strain ZS-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 211868..222365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY062_RS01050 (QY062_01045) - 212042..212725 (+) 684 WP_013059772.1 response regulator transcription factor -
  QY062_RS01055 (QY062_01050) fliS 213148..213579 (+) 432 WP_013059771.1 flagellar export chaperone FliS -
  QY062_RS01060 (QY062_01055) - 213699..214136 (+) 438 WP_013059770.1 YaaR family protein -
  QY062_RS01065 (QY062_01060) - 214243..215088 (+) 846 WP_098534849.1 DegV family protein -
  QY062_RS01070 (QY062_01065) - 215186..216676 (+) 1491 WP_257151527.1 DEAD/DEAH box helicase -
  QY062_RS01075 (QY062_01070) comFC 216868..217365 (+) 498 WP_013059767.1 ComF family protein Machinery gene
  QY062_RS01080 (QY062_01075) - 217427..217840 (+) 414 WP_013059766.1 TIGR03826 family flagellar region protein -
  QY062_RS01085 (QY062_01080) flgM 218000..218254 (+) 255 WP_098534848.1 flagellar biosynthesis anti-sigma factor FlgM -
  QY062_RS01090 (QY062_01085) - 218276..218737 (+) 462 WP_223269021.1 flagellar protein FlgN -
  QY062_RS01095 (QY062_01090) flgK 218756..220279 (+) 1524 WP_098196943.1 flagellar hook-associated protein FlgK -
  QY062_RS01100 (QY062_01095) flgL 220282..221163 (+) 882 WP_057275290.1 flagellar hook-associated protein FlgL -
  QY062_RS01105 (QY062_01100) fliW 221245..221667 (+) 423 WP_013059761.1 flagellar assembly protein FliW -
  QY062_RS01110 (QY062_01105) csrA 221692..221922 (+) 231 WP_013059760.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19273.02 Da        Isoelectric Point: 8.0985

>NTDB_id=856290 QY062_RS01075 WP_013059767.1 216868..217365(+) (comFC) [Priestia megaterium strain ZS-3]
MDCQKWNDASFFNRSLYTYNDFMQSIIERFKFQGDYEIIQAFKEQWYKFYKKECNPKAILVPIPLTDERLYERGFNQSLA
LAELISDNIEMPLVRCSGTKQSKKNRRSRLAERLEFKVVDSSMVTNQEFLLIDDIYTTGATVRQAANCLQEAGAHSVRSL
TLIRA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=856290 QY062_RS01075 WP_013059767.1 216868..217365(+) (comFC) [Priestia megaterium strain ZS-3]
ATGGACTGTCAGAAATGGAATGATGCTTCTTTTTTCAACCGTTCTCTTTATACGTACAATGATTTTATGCAAAGCATAAT
AGAACGTTTTAAATTTCAAGGAGATTATGAAATTATCCAAGCATTCAAGGAGCAGTGGTATAAGTTCTATAAAAAAGAAT
GTAATCCAAAAGCTATACTAGTTCCTATACCTTTAACGGACGAGAGATTATATGAGAGAGGGTTTAACCAATCTTTAGCG
CTAGCTGAACTGATCAGTGACAACATAGAAATGCCTCTTGTTCGCTGTTCAGGAACAAAGCAATCAAAGAAAAATAGGCG
AAGTCGGCTGGCAGAAAGGCTGGAATTTAAAGTAGTCGATTCCTCAATGGTTACGAATCAAGAATTTCTCTTGATTGATG
ATATTTATACAACAGGAGCAACCGTGCGCCAAGCGGCAAATTGTTTGCAGGAAGCTGGGGCACATTCAGTTCGTTCGCTC
ACTTTAATTCGTGCATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(78-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

46.512

100

0.485
  comFC/cflB Streptococcus mitis NCTC 12261

36.095

100

0.37
  comFC/cflB Streptococcus pneumoniae Rx1

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae D39

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae R6

35.714

100

0.364
  comFC/cflB Streptococcus pneumoniae TIGR4

35.714

100

0.364