Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QZJ86_RS02210 Genome accession   NZ_CP129884
Coordinates   467729..468595 (+) Length   288 a.a.
NCBI ID   WP_301936068.1    Uniprot ID   -
Organism   Methylomonas montana strain MW1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 462729..473595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZJ86_RS02200 (QZJ86_02200) pilB 464726..466438 (+) 1713 WP_301936066.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QZJ86_RS02205 (QZJ86_02205) pilC 466441..467658 (+) 1218 WP_301936067.1 type II secretion system F family protein Machinery gene
  QZJ86_RS02210 (QZJ86_02210) pilD 467729..468595 (+) 867 WP_301936068.1 A24 family peptidase Machinery gene
  QZJ86_RS02215 (QZJ86_02215) coaE 468599..469210 (+) 612 WP_301936070.1 dephospho-CoA kinase -
  QZJ86_RS02220 (QZJ86_02220) zapD 469207..469980 (+) 774 WP_301936071.1 cell division protein ZapD -
  QZJ86_RS02225 (QZJ86_02225) - 469980..470183 (+) 204 WP_301936073.1 DNA gyrase inhibitor YacG -
  QZJ86_RS02230 (QZJ86_02230) - 470198..471142 (-) 945 WP_301936076.1 Nudix family hydrolase -
  QZJ86_RS02235 (QZJ86_02235) argJ 471152..472366 (-) 1215 WP_301936078.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  QZJ86_RS02240 (QZJ86_02240) - 472891..473319 (-) 429 WP_301936081.1 hypothetical protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31524.70 Da        Isoelectric Point: 6.5895

>NTDB_id=856191 QZJ86_RS02210 WP_301936068.1 467729..468595(+) (pilD) [Methylomonas montana strain MW1]
MLLASLQQSPLLLISVVFVLGLLVGSFLNVVIYRLPVMMQAGWRRECHDYLQLPLEEEAEVFNLMLPASHCPSCKAEIKA
YQNIPVLSYLLLGGKCGHCGVKIAIRYPLIEAFSGLCSAIVAWHFGYGVALAFALLLTWSLIALSFIDIDQHLLPDSITL
PMLWLGLLLSLFDIYSSSHDAIIGAIAGYLSLWSVYQLFKLLTGKEGMGYGDFKLLALFGAWLGWQYLPLIVLLSSLVGA
VIGVAMIVFGKRDAGKPIPFGPYLAMAGWLAMLFGQEINALYLHAAGL

Nucleotide


Download         Length: 867 bp        

>NTDB_id=856191 QZJ86_RS02210 WP_301936068.1 467729..468595(+) (pilD) [Methylomonas montana strain MW1]
ATGTTGCTTGCCAGTCTTCAACAATCTCCGCTATTGCTGATTAGCGTCGTTTTCGTATTAGGGCTGCTGGTTGGCAGTTT
TCTGAATGTGGTGATTTATCGCTTGCCGGTGATGATGCAAGCCGGCTGGCGGCGCGAATGTCACGATTATCTGCAACTGC
CGCTGGAAGAAGAGGCGGAAGTATTCAACCTGATGTTGCCGGCCTCGCATTGTCCGTCATGCAAGGCCGAGATCAAGGCC
TATCAGAATATTCCGGTGCTCAGTTATCTGTTGCTGGGCGGCAAATGCGGGCATTGCGGCGTCAAAATCGCTATCCGCTA
TCCGCTGATCGAGGCATTCAGCGGATTGTGTTCGGCAATAGTGGCCTGGCATTTCGGTTATGGTGTGGCGTTGGCGTTCG
CGCTGCTGCTGACTTGGAGTTTGATCGCCTTGAGCTTTATCGACATCGATCAGCATTTGCTACCCGATTCCATTACCCTG
CCGATGTTGTGGCTAGGTTTGCTGCTGAGTCTGTTTGATATTTACAGTAGTAGCCACGACGCGATTATCGGTGCGATTGC
CGGCTATTTGAGCCTATGGAGTGTCTACCAGCTATTTAAGCTACTGACCGGCAAGGAAGGTATGGGCTATGGCGATTTCA
AATTGCTAGCGCTATTCGGTGCCTGGCTGGGTTGGCAATATCTGCCGCTGATCGTGCTATTGTCGTCACTGGTGGGGGCG
GTCATCGGGGTTGCGATGATCGTGTTTGGCAAGCGTGATGCCGGCAAACCGATACCGTTCGGCCCCTATCTGGCCATGGC
CGGTTGGTTGGCGATGCTGTTCGGGCAAGAGATCAACGCTTTATATCTGCATGCCGCCGGTTTGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(19-125)

Type IV leader peptidase family (Peptidase_A24)

(136-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

53.571

97.222

0.521
  pilD Acinetobacter nosocomialis M2

53.214

97.222

0.517
  pilD Vibrio campbellii strain DS40M4

51.064

97.917

0.5
  pilD Vibrio cholerae strain A1552

51.439

96.528

0.497
  pilD Neisseria gonorrhoeae MS11

52.174

87.847

0.458