Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QZJ86_RS02205 Genome accession   NZ_CP129884
Coordinates   466441..467658 (+) Length   405 a.a.
NCBI ID   WP_301936067.1    Uniprot ID   -
Organism   Methylomonas montana strain MW1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 461441..472658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZJ86_RS02195 (QZJ86_02195) thiC 462657..464525 (+) 1869 WP_301936063.1 phosphomethylpyrimidine synthase ThiC -
  QZJ86_RS02200 (QZJ86_02200) pilB 464726..466438 (+) 1713 WP_301936066.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QZJ86_RS02205 (QZJ86_02205) pilC 466441..467658 (+) 1218 WP_301936067.1 type II secretion system F family protein Machinery gene
  QZJ86_RS02210 (QZJ86_02210) pilD 467729..468595 (+) 867 WP_301936068.1 A24 family peptidase Machinery gene
  QZJ86_RS02215 (QZJ86_02215) coaE 468599..469210 (+) 612 WP_301936070.1 dephospho-CoA kinase -
  QZJ86_RS02220 (QZJ86_02220) zapD 469207..469980 (+) 774 WP_301936071.1 cell division protein ZapD -
  QZJ86_RS02225 (QZJ86_02225) - 469980..470183 (+) 204 WP_301936073.1 DNA gyrase inhibitor YacG -
  QZJ86_RS02230 (QZJ86_02230) - 470198..471142 (-) 945 WP_301936076.1 Nudix family hydrolase -
  QZJ86_RS02235 (QZJ86_02235) argJ 471152..472366 (-) 1215 WP_301936078.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44523.58 Da        Isoelectric Point: 6.3004

>NTDB_id=856190 QZJ86_RS02205 WP_301936067.1 466441..467658(+) (pilC) [Methylomonas montana strain MW1]
MAKQEEQIEFNWDGFDKQNKKTKGTISAKSEVIARAELRRMGIRVTAIKPKPKPLFGPRVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGKGHDNASMSELLLGIKADVEGGDTLAQALGRKPLYFDDLFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPIAVLVVAFIVTAILLIFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWMVVAVVAVTSYVFM
YFKKRSRPFNHFLDRMLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALASVAGACGNILFYDAVMKVRDDVSTGQ
QLKFALEQTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=856190 QZJ86_RS02205 WP_301936067.1 466441..467658(+) (pilC) [Methylomonas montana strain MW1]
ATGGCGAAACAAGAAGAGCAAATCGAATTCAATTGGGACGGCTTCGATAAACAGAACAAAAAGACCAAAGGCACCATCAG
CGCCAAAAGCGAGGTGATTGCCCGCGCCGAATTGCGGCGGATGGGTATTCGGGTGACGGCGATCAAACCCAAGCCCAAAC
CGCTGTTTGGTCCTAGAGTACAGAAAATCACGCCCGGCGATATTGCGGTATTTGCCAGACAATTGGCCACCATGCTGGCG
GCTGGCGTACCCTTGGTGCAATCCTTCGACATCATCGGCAAGGGCCATGATAATGCCAGCATGTCCGAATTGCTGCTGGG
GATTAAGGCCGACGTGGAAGGCGGTGACACCTTGGCGCAAGCCTTGGGTAGAAAGCCGCTGTATTTCGATGATCTGTTTT
GCAATCTGGTCGAGGCCGGCGAACATGCCGGGGTGTTGGAAACCTTGCTGGACAAGATCGCTACTTACAAAGAAAAGACC
GAATCGATCAAGAAAAAAGTTAAAAAAGCCTTGACCTATCCGATTGCGGTATTGGTAGTGGCGTTTATCGTTACCGCGAT
TTTGCTGATTTTCGTGGTGCCGGTGTTCGAGGATTTGTTTAAAGGTTTCGGTGCCGATCTGCCGGCGTTCACTCAGTTTG
TCATCGAGTTATCGGCCTGGGTGCAGGAATGGTGGTGGATGGTGGTGGCCGTGGTTGCGGTCACTTCTTATGTGTTTATG
TATTTTAAGAAACGCTCGCGGCCGTTTAACCATTTTCTGGATAGGATGTTGTTGAAAATTCCGGTGGTGGGCATGATTCT
GGAAAAATCGGCTATCGCTCGCTTTGCCAGAACCCTCTCCACCATGTCGGCGGCCGGGGTGCCCTTGGTCGAGGCGCTGG
CTTCCGTAGCCGGGGCCTGCGGCAATATTTTGTTCTACGATGCGGTCATGAAAGTCCGCGATGACGTATCCACCGGTCAG
CAATTGAAATTTGCATTGGAACAGACCGGCATGTTTCCGAATATGGTGGTGCAAATGGTGGCAATCGGCGAGGAGTCAGG
CTCGATCGACGCCATGCTGGATAAGGTCGCCGATTTCTACGAAGAAGAAGTGGATAATCTGGTCGACAATTTAAGCAGCT
TGATGGAGCCTATCATTATGGTGATATTGGGTATCCTGGTCGGCGGTTTGATCGTCGCGATGTATTTGCCTATCTTCAAG
CTGGGCGCTGCCATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

60.05

98.272

0.59
  pilC Pseudomonas stutzeri DSM 10701

57.576

97.778

0.563
  pilC Acinetobacter baylyi ADP1

52.696

100

0.531
  pilC Acinetobacter baumannii D1279779

53.652

98.025

0.526
  pilG Neisseria gonorrhoeae MS11

46.569

100

0.469
  pilG Neisseria meningitidis 44/76-A

46.569

100

0.469
  pilC Vibrio cholerae strain A1552

42.494

97.037

0.412
  pilC Vibrio campbellii strain DS40M4

40.204

97.037

0.39