Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QZJ86_RS01575 Genome accession   NZ_CP129884
Coordinates   325892..326953 (+) Length   353 a.a.
NCBI ID   WP_301935927.1    Uniprot ID   -
Organism   Methylomonas montana strain MW1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 320892..331953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZJ86_RS01560 (QZJ86_01560) - 321326..322672 (+) 1347 WP_301935925.1 AmpG family muropeptide MFS transporter -
  QZJ86_RS01565 (QZJ86_01565) rpmE 323045..323245 (+) 201 WP_081607938.1 50S ribosomal protein L31 -
  QZJ86_RS01570 (QZJ86_01570) - 323319..325679 (-) 2361 WP_301935926.1 penicillin-binding protein 1A -
  QZJ86_RS01575 (QZJ86_01575) pilM 325892..326953 (+) 1062 WP_301935927.1 pilus assembly protein PilM Machinery gene
  QZJ86_RS01580 (QZJ86_01580) - 326953..327525 (+) 573 WP_301935928.1 PilN domain-containing protein -
  QZJ86_RS01585 (QZJ86_01585) - 327522..328136 (+) 615 WP_301935929.1 type 4a pilus biogenesis protein PilO -
  QZJ86_RS01590 (QZJ86_01590) - 328136..328690 (+) 555 WP_301939076.1 pilus assembly protein PilP -
  QZJ86_RS01595 (QZJ86_01595) pilQ 328694..330955 (+) 2262 WP_301935930.1 type IV pilus secretin PilQ -
  QZJ86_RS01600 (QZJ86_01600) - 331126..331230 (+) 105 WP_301939077.1 LPS translocon maturation chaperone LptM -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37814.31 Da        Isoelectric Point: 4.6392

>NTDB_id=856188 QZJ86_RS01575 WP_301935927.1 325892..326953(+) (pilM) [Methylomonas montana strain MW1]
MSWFSRNPSAVLGVDISTAAVKLLELSRVGARYRVESYAVAPLPQDAIVDKNITNVEQIGAVIKAAVKQSGTRAKLASVA
VAGSSVMTKIISMPASLSDAEMEEQIMVEADQYIPYSLDEVNLDFEVQGVTKNSPEMVDVLLAASRRENIEDRVAALAYA
GLKAVVVDVEAFAMENAFSLLADQLPEGIGNMTVAIADIGATMTSLNILHDGKTVYTREQGFGGKQLTEEIQRRYGLSYE
EAGLAKKHGGLPDNYVADVLDPFKKAMLQQIARSLQFFVSSSANRGVDALILAGGCASIAGLDKLVERDLGIPSYTANPF
INMALSNRVKPQSLSNDTPAMMIACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=856188 QZJ86_RS01575 WP_301935927.1 325892..326953(+) (pilM) [Methylomonas montana strain MW1]
ATGAGCTGGTTTAGCAGGAATCCGTCGGCTGTGCTAGGTGTGGATATTAGTACTGCGGCGGTTAAATTGTTGGAATTAAG
TCGGGTCGGTGCGCGCTACAGAGTGGAAAGTTATGCTGTAGCGCCTTTGCCTCAAGATGCAATCGTCGACAAGAACATCA
CCAATGTCGAACAAATCGGTGCTGTGATTAAAGCCGCCGTGAAGCAATCCGGTACTCGCGCCAAACTGGCGAGTGTCGCG
GTTGCCGGTTCGTCGGTGATGACCAAGATTATTTCGATGCCGGCTTCCTTGTCCGATGCCGAGATGGAAGAGCAGATCAT
GGTTGAGGCCGATCAATATATCCCCTATTCGTTGGATGAAGTGAATTTGGACTTTGAAGTCCAAGGTGTCACCAAAAATA
GTCCGGAAATGGTTGATGTCTTATTGGCGGCCTCTCGGCGGGAAAACATCGAAGATCGTGTTGCCGCATTGGCTTATGCC
GGATTAAAGGCAGTTGTTGTCGATGTCGAGGCATTTGCCATGGAAAACGCATTTTCATTATTGGCCGATCAGTTACCGGA
AGGCATAGGCAATATGACGGTGGCAATTGCCGATATTGGCGCCACCATGACGTCCTTAAATATTCTGCACGACGGTAAAA
CTGTTTATACCCGCGAACAAGGCTTTGGTGGCAAACAACTTACCGAGGAAATTCAGCGGCGCTATGGCCTCTCTTACGAA
GAGGCCGGTTTAGCAAAGAAGCATGGTGGTTTGCCCGATAATTACGTGGCGGATGTGCTCGATCCTTTCAAAAAAGCCAT
GCTGCAGCAAATTGCCAGATCGTTGCAATTTTTCGTCTCTTCCAGTGCGAATCGCGGCGTCGACGCGCTGATCCTTGCCG
GAGGCTGTGCTTCAATCGCCGGTCTGGATAAATTAGTGGAACGGGATTTGGGGATCCCTTCTTATACGGCGAATCCATTC
ATCAACATGGCGCTTTCCAATCGCGTCAAACCACAAAGTCTAAGCAACGATACGCCCGCCATGATGATAGCTTGTGGTTT
AGCGTTAAGGAGTTTCGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.412

100

0.516
  comM Acinetobacter nosocomialis M2

51.412

100

0.516
  comM Acinetobacter baylyi ADP1

48.725

100

0.487
  pilM Legionella pneumophila strain ERS1305867

42.151

97.45

0.411