Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KJS82_RS14425 | Genome accession | NZ_AP024511 |
| Coordinates | 2899312..2899782 (+) | Length | 156 a.a. |
| NCBI ID | WP_000610648.1 | Uniprot ID | A0A090M1W2 |
| Organism | Staphylococcus aureus isolate 2007-13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2862425..2906384 | 2899312..2899782 | within | 0 |
Gene organization within MGE regions
Location: 2862425..2906384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KJS82_RS14170 (RVB3_26650) | groES | 2862425..2862709 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| KJS82_RS14175 (RVB3_26660) | groL | 2862785..2864401 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| KJS82_RS14180 (RVB3_26670) | - | 2864470..2865642 (-) | 1173 | WP_000179343.1 | tyrosine-type recombinase/integrase | - |
| KJS82_RS14185 (RVB3_26680) | - | 2865656..2866330 (-) | 675 | WP_000620857.1 | helix-turn-helix transcriptional regulator | - |
| KJS82_RS14190 (RVB3_26690) | - | 2866503..2866721 (+) | 219 | WP_000153640.1 | helix-turn-helix transcriptional regulator | - |
| KJS82_RS14195 (RVB3_26700) | - | 2866726..2867043 (+) | 318 | WP_000481967.1 | helix-turn-helix domain-containing protein | - |
| KJS82_RS14200 (RVB3_26710) | - | 2867040..2867186 (+) | 147 | WP_000784885.1 | hypothetical protein | - |
| KJS82_RS14205 (RVB3_26720) | - | 2867203..2867388 (+) | 186 | WP_223200634.1 | pathogenicity island protein | - |
| KJS82_RS14210 (RVB3_26730) | - | 2867391..2867717 (+) | 327 | WP_001078344.1 | DUF1474 family protein | - |
| KJS82_RS14215 (RVB3_26740) | - | 2867782..2868651 (+) | 870 | WP_001002689.1 | primase alpha helix C-terminal domain-containing protein | - |
| KJS82_RS14220 (RVB3_26750) | - | 2868665..2870374 (+) | 1710 | WP_213607923.1 | DUF927 domain-containing protein | - |
| KJS82_RS14225 (RVB3_26760) | - | 2870684..2871064 (+) | 381 | WP_000356942.1 | hypothetical protein | - |
| KJS82_RS14230 (RVB3_26770) | - | 2871061..2871702 (+) | 642 | WP_001047698.1 | hypothetical protein | - |
| KJS82_RS14235 (RVB3_26780) | - | 2872152..2872493 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| KJS82_RS14240 (RVB3_26790) | - | 2872505..2873083 (+) | 579 | WP_000846280.1 | hypothetical protein | - |
| KJS82_RS14245 (RVB3_26800) | - | 2873101..2873319 (+) | 219 | WP_000448770.1 | capsid morphogenesis B protein | - |
| KJS82_RS14250 (RVB3_26810) | - | 2873370..2873897 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| KJS82_RS14255 (RVB3_26820) | - | 2873900..2874241 (+) | 342 | WP_000358774.1 | hypothetical protein | - |
| KJS82_RS14260 (RVB3_26830) | - | 2874238..2874807 (+) | 570 | WP_001293088.1 | terminase small subunit | - |
| KJS82_RS14265 (RVB3_26840) | tst | 2874962..2875666 (-) | 705 | WP_001035599.1 | toxic shock syndrome toxin TSST-1 | - |
| KJS82_RS14270 (RVB3_26850) | - | 2876544..2877104 (-) | 561 | WP_001035616.1 | DUF4888 domain-containing protein | - |
| KJS82_RS14275 (RVB3_26860) | sec3 | 2877892..2878692 (+) | 801 | WP_000278088.1 | staphylococcal enterotoxin type C3 | - |
| KJS82_RS14280 (RVB3_26870) | sel | 2878861..2879583 (-) | 723 | WP_000746599.1 | staphylococcal enterotoxin type L | - |
| KJS82_RS14285 (RVB3_26880) | - | 2880600..2881907 (-) | 1308 | WP_031811679.1 | TrkH family potassium uptake protein | - |
| KJS82_RS14290 (RVB3_26890) | - | 2882351..2883574 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| KJS82_RS14295 (RVB3_26900) | lukH | 2884010..2885065 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| KJS82_RS14300 (RVB3_26910) | lukG | 2885087..2886103 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| KJS82_RS14305 (RVB3_26920) | sph | 2886341..2887171 (-) | 831 | Protein_2798 | sphingomyelin phosphodiesterase | - |
| KJS82_RS14310 (RVB3_26930) | - | 2887222..2888259 (-) | 1038 | WP_000857198.1 | site-specific integrase | - |
| KJS82_RS14315 (RVB3_26940) | - | 2888453..2889157 (-) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| KJS82_RS14320 (RVB3_26950) | - | 2889297..2889464 (-) | 168 | WP_000705241.1 | hypothetical protein | - |
| KJS82_RS14325 (RVB3_26960) | - | 2889534..2889719 (-) | 186 | WP_000109189.1 | hypothetical protein | - |
| KJS82_RS14330 (RVB3_26970) | - | 2889716..2889862 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| KJS82_RS14335 (RVB3_26980) | - | 2889936..2890790 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| KJS82_RS14340 (RVB3_26990) | - | 2890802..2891518 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| KJS82_RS14345 (RVB3_27000) | - | 2891682..2891924 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| KJS82_RS14350 (RVB3_27010) | - | 2891937..2892383 (+) | 447 | WP_000435349.1 | hypothetical protein | - |
| KJS82_RS14355 (RVB3_27020) | - | 2892398..2892538 (+) | 141 | WP_000939495.1 | hypothetical protein | - |
| KJS82_RS14360 (RVB3_27030) | - | 2892531..2892740 (-) | 210 | WP_000772137.1 | hypothetical protein | - |
| KJS82_RS14365 (RVB3_27040) | - | 2892797..2893546 (+) | 750 | WP_001148587.1 | phage antirepressor KilAC domain-containing protein | - |
| KJS82_RS14370 (RVB3_27050) | - | 2893562..2893756 (+) | 195 | WP_001148852.1 | hypothetical protein | - |
| KJS82_RS14375 (RVB3_27060) | - | 2893751..2894107 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| KJS82_RS14380 (RVB3_27070) | - | 2894157..2894348 (+) | 192 | WP_000389906.1 | hypothetical protein | - |
| KJS82_RS14385 (RVB3_27080) | - | 2894350..2894577 (-) | 228 | WP_000801108.1 | hypothetical protein | - |
| KJS82_RS14390 (RVB3_27090) | - | 2894636..2894956 (+) | 321 | WP_001120935.1 | DUF771 domain-containing protein | - |
| KJS82_RS14395 (RVB3_27100) | - | 2894953..2895114 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| KJS82_RS14400 (RVB3_27110) | - | 2895207..2895467 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| KJS82_RS14405 (RVB3_27120) | - | 2895476..2895739 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| KJS82_RS14410 (RVB3_27130) | - | 2895736..2897691 (+) | 1956 | WP_213607926.1 | AAA family ATPase | - |
| KJS82_RS14415 (RVB3_27140) | - | 2897693..2898613 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| KJS82_RS14420 (RVB3_27150) | - | 2898694..2899311 (+) | 618 | WP_073394849.1 | MBL fold metallo-hydrolase | - |
| KJS82_RS14425 (RVB3_27160) | ssbA | 2899312..2899782 (+) | 471 | WP_000610648.1 | single-stranded DNA-binding protein | Machinery gene |
| KJS82_RS14430 (RVB3_27170) | - | 2899812..2900705 (+) | 894 | WP_000148321.1 | DnaD domain-containing protein | - |
| KJS82_RS14435 (RVB3_27180) | - | 2900712..2900930 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| KJS82_RS14440 (RVB3_27190) | - | 2900939..2901343 (+) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KJS82_RS14445 (RVB3_27200) | - | 2901356..2901724 (+) | 369 | WP_033861437.1 | SA1788 family PVL leukocidin-associated protein | - |
| KJS82_RS14450 (RVB3_27210) | - | 2901728..2901970 (+) | 243 | WP_213607928.1 | SAV1978 family virulence-associated passenger protein | - |
| KJS82_RS14455 (RVB3_27220) | - | 2901984..2902385 (+) | 402 | WP_000695759.1 | hypothetical protein | - |
| KJS82_RS14460 (RVB3_27230) | - | 2902382..2902729 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| KJS82_RS14465 (RVB3_27240) | - | 2902726..2903259 (+) | 534 | WP_031868690.1 | hypothetical protein | - |
| KJS82_RS14470 (RVB3_27250) | - | 2903256..2903666 (+) | 411 | WP_000197967.1 | hypothetical protein | - |
| KJS82_RS14475 (RVB3_27260) | - | 2903659..2904195 (+) | 537 | WP_001066443.1 | dUTP diphosphatase | - |
| KJS82_RS14480 (RVB3_27270) | - | 2904232..2904477 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| KJS82_RS14485 (RVB3_27280) | - | 2904474..2904680 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| KJS82_RS14490 (RVB3_27290) | - | 2904677..2905063 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| KJS82_RS14495 (RVB3_27300) | - | 2905060..2905209 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| KJS82_RS14500 (RVB3_27310) | - | 2905209..2905409 (+) | 201 | WP_001622114.1 | DUF1514 family protein | - |
| KJS82_RS14505 (RVB3_27320) | - | 2905437..2905853 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| KJS82_RS14510 (RVB3_27330) | - | 2906085..2906384 (+) | 300 | WP_213607930.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=85594 KJS82_RS14425 WP_000610648.1 2899312..2899782(+) (ssbA) [Staphylococcus aureus isolate 2007-13]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=85594 KJS82_RS14425 WP_000610648.1 2899312..2899782(+) (ssbA) [Staphylococcus aureus isolate 2007-13]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.558 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |