Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIA76_RS16795 Genome accession   NZ_CP146515
Coordinates   3266732..3267268 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain MDP9-27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3261732..3272268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA76_RS16775 (FIA76_016775) soxR 3263460..3263924 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  FIA76_RS16780 (FIA76_016780) soxS 3264010..3264333 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FIA76_RS16785 (FIA76_016785) pdeC 3264336..3265922 (-) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  FIA76_RS16790 (FIA76_016790) yjcB 3266352..3266633 (+) 282 WP_001295689.1 YjcB family protein -
  FIA76_RS16795 (FIA76_016795) ssb 3266732..3267268 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FIA76_RS16800 (FIA76_016800) uvrA 3267522..3270344 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FIA76_RS16805 (FIA76_016805) yjbR 3270379..3270735 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FIA76_RS16810 (FIA76_016810) yjbQ 3270739..3271155 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FIA76_RS16815 (FIA76_016815) aphA 3271266..3271979 (-) 714 WP_001315956.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=855386 FIA76_RS16795 WP_000168305.1 3266732..3267268(-) (ssb) [Escherichia coli strain MDP9-27]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=855386 FIA76_RS16795 WP_000168305.1 3266732..3267268(-) (ssb) [Escherichia coli strain MDP9-27]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489