Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIA71_RS17490 Genome accession   NZ_CP146507
Coordinates   3552013..3552549 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3547013..3557549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA71_RS17470 (FIA71_017470) aphA 3547302..3548015 (+) 714 WP_001315956.1 acid phosphatase AphA -
  FIA71_RS17475 (FIA71_017475) yjbQ 3548126..3548542 (+) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  FIA71_RS17480 (FIA71_017480) yjbR 3548546..3548902 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  FIA71_RS17485 (FIA71_017485) uvrA 3548937..3551759 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  FIA71_RS17490 (FIA71_017490) ssb 3552013..3552549 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  FIA71_RS17495 (FIA71_017495) yjcB 3552648..3552929 (-) 282 WP_001295689.1 YjcB family protein -
  FIA71_RS17500 (FIA71_017500) pdeC 3553359..3554945 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  FIA71_RS17505 (FIA71_017505) soxS 3554948..3555271 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  FIA71_RS17510 (FIA71_017510) soxR 3555357..3555821 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=855251 FIA71_RS17490 WP_000168305.1 3552013..3552549(+) (ssb) [Escherichia coli strain 10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=855251 FIA71_RS17490 WP_000168305.1 3552013..3552549(+) (ssb) [Escherichia coli strain 10]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489