Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYQ99_RS10755 Genome accession   NZ_CP129672
Coordinates   2357916..2358470 (-) Length   184 a.a.
NCBI ID   WP_302092620.1    Uniprot ID   -
Organism   Comamonas testosteroni strain MWF001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2352916..2363470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ99_RS10735 (QYQ99_10735) moaC 2354289..2354750 (+) 462 WP_302092616.1 cyclic pyranopterin monophosphate synthase MoaC -
  QYQ99_RS10740 (QYQ99_10740) - 2354762..2355823 (-) 1062 WP_302092617.1 O-antigen ligase -
  QYQ99_RS10745 (QYQ99_10745) - 2356227..2356691 (-) 465 WP_302092618.1 pilin -
  QYQ99_RS10750 (QYQ99_10750) - 2356880..2357599 (-) 720 WP_302092619.1 FHA domain-containing protein -
  QYQ99_RS10755 (QYQ99_10755) ssb 2357916..2358470 (-) 555 WP_302092620.1 single-stranded DNA-binding protein Machinery gene
  QYQ99_RS10760 (QYQ99_10760) - 2358744..2359916 (-) 1173 WP_302093153.1 MFS transporter -
  QYQ99_RS10765 (QYQ99_10765) uvrA 2360310..2363378 (+) 3069 WP_302092621.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20230.39 Da        Isoelectric Point: 5.9603

>NTDB_id=854849 QYQ99_RS10755 WP_302092620.1 2357916..2358470(-) (ssb) [Comamonas testosteroni strain MWF001]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAAPRRQAPAPMQQQRPAPAPMQQRAA
PAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=854849 QYQ99_RS10755 WP_302092620.1 2357916..2358470(-) (ssb) [Comamonas testosteroni strain MWF001]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGCGAAAACCGCGAAGCCACCGAATGGC
ACCGCGTCGTCTTCAACGGCAAACTGGCCGAAATTGTGGGTCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGATGCGATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCAGCACCCCGCCGTCAGGCTCCTGCACCCATGCAGCAGCAGCGCCCTGCACCGGCACCCATGCAGCAGCGTGCTGCT
CCTGCTCCCATGGCTCCTCCTCCCCAGCGCGCAGCTTCGGGGTTTGACGATATGGATGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.646

100

0.56
  ssb Glaesserella parasuis strain SC1401

51.042

100

0.533
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.478
  ssb Neisseria meningitidis MC58

45.604

98.913

0.451